Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq835 333 3e-86 seq500 188 8e-43 >seq835 Length=76541 Score = 333 bits (368), Expect = 3e-86 Identities = 625/907 (69%), Gaps = 14/907 (2%) Strand=Plus/Plus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCA 18733 |||||| |||| | ||| ||||| || || |||||||| | | ||||| ||| |||| Sbjct 29505 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATAT-CATATCCA 29563 Query 18734 TAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTC 18793 | | ||||| ||||| | | ||||| || ||| || | | | || | || Sbjct 29564 TCCAGTCAAAGGGATTAGAAGCTTGATATAACTTGCTGACGCCAAGTGCATGTAACAATC 29623 Query 18794 TATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 |||||| ||||| | || ||| ||||| | |||||||||| |||| | | Sbjct 29624 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 29683 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATA 18913 | || |||| |||| | |||||||||||| || | || || || || || || | Sbjct 29684 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCAT 29743 Query 18914 CAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA--ACATCAAACATGCAAAATC 18971 || |||| | | || ||| | | || | |||||| ||||||||| || Sbjct 29744 GAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAGTC 29801 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||||||||| || || | ||| || | ||||| ||||| | |||||||||| Sbjct 29802 ACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAA 29861 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTA 19090 ||||| ||| || | ||| |||||||| ||| |||||||| || || || || ||||| | Sbjct 29862 TCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTCGA 29920 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTATTATGAATCCATTTC 19149 | || ||||| || || | ||||||| || ||| || ||| || || ||||||| Sbjct 29921 CGGCCGCAAAGGCTACCACTCTTTCTGCA-AACGAGGCATACTTTGGATCGCACCATTTC 29979 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| | || || || | || || || ||||| || || | | || || | Sbjct 29980 AACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGC 30039 Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 ||| || |||||| | |||| ||| |||||||| |||| ||| || || Sbjct 30040 TGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGT 30099 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 ||||||||||| || || |||||||||||||| |||| ||||| | ||||| || ||| Sbjct 30100 ATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA 30159 Query 19330 CTAC--AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || | ||| || | | | | ||||||||| || ||||||||||| |||||||| || | Sbjct 30160 CTGCTGAAATTCAT--GGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGG 30217 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | || || ||||| ||||| ||| |||||| | || || ||| ||||| || | Sbjct 30218 CCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCATGT 30277 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | | ||||| | |||||| | |||||||| ||||||||||| |||||||||| Sbjct 30278 CATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACATGT 30337 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 ||| || ||| | |||||| ||||||| ||||| | || ||||||| ||||| Sbjct 30338 CCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAAGAA 30397 Query 19568 TAGGTTC 19574 |||||| Sbjct 30398 AAGGTTC 30404 >seq500 Length=28399 Score = 188 bits (208), Expect = 8e-43 Identities = 419/626 (67%), Gaps = 2/626 (0%) Strand=Plus/Plus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| || ||||||||||| ||| ||||| | || || | ||||| Sbjct 23760 TCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCAT 23819 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| |||| | ||||| ||||| || | ||||| |||||||| || |||| || Sbjct 23820 TTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGAT 23879 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | ||||| | ||| || || ||| |||||||| | |||| || || | | Sbjct 23880 AAATTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCAT 23939 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | |||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 23940 TGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAAC 23999 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | | | | ||||| ||| | || ||||| || ||| || || || Sbjct 24000 TGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATAC 24059 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || || ||||| || || ||| ||||||| ||| ||||| Sbjct 24060 ACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATA 24119 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||||| || | ||| || || ||||| | ||| || | || |||| ||||| Sbjct 24120 GAAAACACGACGATAATTGAGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCAT 24179 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| | || | ||| | || ||| ||||| | ||| | ||| | || | || Sbjct 24180 GCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTT 24239 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGTTA 48749 ||||| || | || || ||||||| ||||| ||| || | |||| ||| |||| | Sbjct 24240 TGTGTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCA 24298 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 || | ||| ||||| ||||| |||| |||||||| |||||||||| ||| |||| Sbjct 24299 TTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAG 24358 Query 48810 TCGTTATCATTAATAATTGATGAATT 48835 || ||||| ||||| | ||||| Sbjct 24359 TCTCTATCACCGATAATGGCGGAATT 24384 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 |||||| | ||| ||||| || || || | |||| ||||| | ||||||||||| Sbjct 22555 TGTTCGGAGATAGTACATTCCTGTTTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 22614 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 ||| | |||| | | || || | ||| ||||||||||| |||||||||||| ||| Sbjct 22615 AGTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTAAGTGATTGACTCTGACAAAT 22674 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | || |||| ||| || ||||| || ||||| || |||| || ||||| ||||| Sbjct 22675 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 22734 Query 47192 TTTATAAATTTGTTT 47206 ||| || ||| ||| Sbjct 22735 TTTGTACTTTTCTTT 22749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562023008144400