Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq378 131 3e-25 seq3650 113 8e-20 seq3863 100 5e-16 seq2154 96.9 6e-15 seq469 89.7 9e-13 >seq378 Length=86116 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | | |||||||||||||| | |||| |||||| ||| || || || | Sbjct 523 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 464 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | ||| | || || | |||||| ||||||||||||| | || || || |||| Sbjct 463 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 404 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | ||||||||||| || || || || | || | ||| |||||||| ||||| || | Sbjct 403 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 344 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| | || |||||||| || || ||||| || ||||| ||||||||| Sbjct 343 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 294 Score = 109 bits (120), Expect = 1e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| ||||| || | ||||| || || Sbjct 303 AATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTT 244 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | ||||| || |||| |||||| ||||| || || | | || || Sbjct 243 GTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTG 184 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| |||||||| || || || || || | || | || |||||| || || Sbjct 183 ATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGA 124 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| | |||||||||||| || || | ||||| |||||||| |||||| Sbjct 123 TGACTCGACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 66 >seq3650 Length=4340 Score = 113 bits (124), Expect = 8e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||||||||| || || || | | || ||||||||||| ||||||||||| ||||| || Sbjct 3 TTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAAT 62 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 |||| |||| ||| || || || |||||||||||||| | ||| || || || || Sbjct 63 CTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCC 122 Query 193334 TGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| ||||| || ||||| Sbjct 123 AGTAAGCGTTTTCACAAAAATCTGCAT 149 >seq3863 Length=215 Score = 100 bits (110), Expect = 5e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||||||||| || || || | | || ||||||||||| |||||||| || || || || Sbjct 3 TTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGAT 62 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 || | || | || |||||| || || ||||| ||||| | |||||| ||||| || Sbjct 63 CTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCC 122 Query 193334 TGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||| ||||||||| Sbjct 123 AGTCAGCGTCTTAACAAAAATTTGCATT 150 >seq2154 Length=27549 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| || ||||| || | |||||| || ||||| |||||||| || Sbjct 4238 TCCTCCAATTGTTTTCCTGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTG 4179 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || || ||||| || || || || ||||| || Sbjct 4178 TCTTGAATCTTCGCCTTCACATTATCGATCGTGTCGGATGATTCGACCTCAAGAGTGATT 4119 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || |||||| Sbjct 4118 GTTTTCCCGGTGAGTGTCTTGACGAAAATCTGCATT 4083 >seq469 Length=169936 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||||||||||| | ||||| |||||||| |||||||| || Sbjct 159196 TCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 159137 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || ||| | || | ||| ||| || || | || || ||||| || || || Sbjct 159136 TCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTAATT 159077 Query 193326 GTTTTACCTGTT 193337 ||||| ||| || Sbjct 159076 GTTTTTCCTATT 159065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899517090247200