Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq378 122 2e-22 seq3650 98.7 2e-15 seq2154 93.3 8e-14 >seq378 Length=86116 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | |||||| | ||| | ||| | |||| |||||| || || ||||| | Sbjct 523 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 464 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || ||| | || |||| ||||||||| ||||| |||| | || || || || | Sbjct 463 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 404 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||||||| || || || || || ||||| |||| |||||| ||||| | Sbjct 403 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 344 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| | ||||| ||||| ||||| | || |||| ||| || |||||| Sbjct 343 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 294 Score = 120 bits (132), Expect = 6e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||| || || || || || | ||||| ||| || ||||| Sbjct 296 ATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 237 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| | || || | ||||||||| || ||||| | | || |||||||| Sbjct 236 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGA 177 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || || || |||| ||||| || || Sbjct 176 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCG 117 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| || ||||| ||||| || ||||| | ||||||||||||| Sbjct 116 ACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 66 >seq3650 Length=4340 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 |||||| ||||| ||||| | | || |||||||| || ||||||||||| ||||| || Sbjct 3 TTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAAT 62 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || ||||||||| || | ||||| || || ||||| | ||| ||||| || || Sbjct 63 CTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCC 122 Query 192510 AGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||||| | ||| |||||||| Sbjct 123 AGTAAGCGTTTTCACAAAAATCTGCAT 149 >seq2154 Length=27549 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | ||||| | || ||||||||||| || || || || || | Sbjct 4266 GATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATCAAACG 4207 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || || || |||||||| || ||||| || || || |||||| || | Sbjct 4206 CTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCGATCGT 4147 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || ||||| || ||||| || || | ||| || | || ||||| Sbjct 4146 GTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAAATCTG 4087 Query 192534 CATT 192537 |||| Sbjct 4086 CATT 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984325987333500