Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq378 118 1e-21 seq3650 104 2e-17 seq469 96.9 3e-15 seq500 91.5 1e-13 >seq378 Length=86116 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| ||||| || || |||||||||||| | ||||| ||| | | Sbjct 295 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 354 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| |||||||||||||| ||||| || || Sbjct 355 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 414 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 |||||| | || |||||||| ||||| ||||| || || || || | | ||||| Sbjct 415 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGA--CG-GACGCACGCTTGCGGATTAC 471 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| || || || || || || |||| Sbjct 472 AACATTCAGAAAGAGTCTACGCTTCATCTGGT 503 >seq3650 Length=4340 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| ||| | |||||||| || || || || || || | ||||| || | Sbjct 152 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 93 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | ||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 92 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 33 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 || |||||| ||||||| || || ||||| || Sbjct 32 CAGCAACGTCTGATCTTCGCTGGAAAACAACT 1 >seq469 Length=169936 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| ||||| |||||||||||| | | ||||| | || | || || ||| Sbjct 159069 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 159128 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || |||||||| |||||||| ||||| || ||||||||| | || |||||||| ||||| Sbjct 159129 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 159188 Query 24851 CTGGAGGA 24858 || || || Sbjct 159189 CTTGAAGA 159196 >seq500 Length=28399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 280/426 (66%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 138193 GTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAA 138252 |||| ||||| |||||||| ||||| | || |||| ||| ||||| | || |||||| Sbjct 22556 GTTCGGAGATAGTACATTCCTGTTTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 22615 Query 138253 GTGAGTAACGCGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATG 138312 |||||| | |||||| | || | || |||| |||||||||||| ||| Sbjct 22616 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTAAGTGATTGACTCTGACAAATG 22675 Query 138313 AAAGCGCCTCGATCAATGGCCATGTTAATTAAAT----TTTTACTTTTCATCTCCCACAC 138368 | || |||||||| ||||||| | |||| |||| | || || ||||| || Sbjct 22676 TACGCTCCTCGATCGGCAGCCATGTCCA--AAATCGCCTTTTGC--TTGATTTCCCAAAC 22731 Query 138369 GGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTT 138428 || ||||| || | ||| |||| ||| || |||||||| | | ||| Sbjct 22732 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCG-C 22790 Query 138429 GGCCGC-AATGATGCGATTTCTCATGTCATCGTTGT--ACAGATTCAACTTGATCAAGTC 138485 | ||| || ||| |||| | | ||| | ||| ||| ||||| || || | || Sbjct 22791 GATCGCGAAGGATTTGATTCCGAACGTC--TGATGTCCACAAATTCATCTCAATAAGCTC 22848 Query 138486 GTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAAT 138545 | || |||||| |||| | | |||||| || || | || || ||| | | || Sbjct 22849 TTCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACAT 22908 Query 138546 GTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGT 138605 |||| ||||| ||||| | || ||| || || ||||| |||||||| | ||||| Sbjct 22909 GTTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGT 22968 Query 138606 CGGCAT 138611 ||||| Sbjct 22969 TGGCAT 22974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449828934378800