Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq378 170 4e-37 seq3650 138 2e-27 seq3863 127 4e-24 seq469 120 6e-22 seq2154 113 9e-20 seq6259 109 1e-18 seq7101 98.7 2e-15 >seq378 Length=86116 Score = 170 bits (188), Expect = 4e-37 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || ||||||||||| || || ||||| | || ||| || Sbjct 282 ACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCC 223 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||||||||||||| || || ||||| || | ||| ||||| ||||| ||||||||||| Sbjct 222 GTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTT 163 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || ||||| || || | || |||||||||||||| Sbjct 162 GTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTAT 103 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| || || ||||||||||||||| Sbjct 102 AGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 66 >seq3650 Length=4340 Score = 138 bits (152), Expect = 2e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||||||||| ||||| || | ||| ||||| ||||| |||||||| || |||||| Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGA 60 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || |||||||| || ||||| || || || ||||||||||| || ||||| Sbjct 61 ATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTT 120 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || ||||| |||||||| Sbjct 121 CCAGTAAGCGTTTTCACAAAAATCTGCAT 149 >seq3863 Length=215 Score = 127 bits (140), Expect = 4e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||||||||| ||||| || | ||| ||||| ||||| ||||||||||| || || Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGG 60 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || || || ||||| || || | || |||||||||||||| || || Sbjct 61 ATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTC 120 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || |||| |||||| ||||| || |||||| Sbjct 121 CCAGTCAGCGTCTTAACAAAAATTTGCATT 150 >seq469 Length=169936 Score = 120 bits (132), Expect = 6e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | | ||||||||| ||||||||||| ||||| ||||| | |||||| || ||||| Sbjct 159209 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 159150 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||||||||| ||||||||| ||||| || ||||| |||||||| || | ||||| Sbjct 159149 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTA 159091 Query 82762 CTTCCAAAGTTATCGTCTTGCCT 82784 |||| | || || || || ||| Sbjct 159090 CTTCGAGTGTAATTGTTTTTCCT 159068 >seq2154 Length=27549 Score = 113 bits (124), Expect = 9e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || ||||| | || ||| ||||| || | ||||||||| || || | Sbjct 4273 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 4214 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | | ||||| || ||||| ||||||||||| ||||||||||| || || ||||| | Sbjct 4213 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 4154 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | ||||| || | ||| || || | ||| || || || || || | ||||| || | Sbjct 4153 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 4094 Query 82801 ATATCTGCATTATTA 82815 | ||||||||| ||| Sbjct 4093 AAATCTGCATTCTTA 4079 >seq6259 Length=113 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || |||||||||| || ||||||||||| || || ||||| | ||| | | |||||| Sbjct 113 AGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCT 54 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||||||||||||||||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 53 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTC 1 >seq7101 Length=52731 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||||||||| || ||||| || ||||||||| | || || Sbjct 35708 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 35767 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || || || ||||| ||||| |||||||| Sbjct 35768 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 35814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981673602339190