Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq500 159 8e-34 seq835 109 1e-18 seq162 93.3 1e-13 seq1341 87.8 4e-12 >seq500 Length=28399 Score = 159 bits (176), Expect = 8e-34 Identities = 423/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 110271 ATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGT 110330 ||||||| | ||| | |||| |||| ||||||||||| || |||||||| || Sbjct 24375 ATTATCGGTGATA---GAGACTTTGATTACGACTATTTTGGCTTTAAAACTCTGGAGAAA 24319 Query 110331 GCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGT 110390 | ||| | | ||||| ||||| | | |||||| || ||||| ||| | | || Sbjct 24318 TCGTATCTGTTGCGTGTGAATGGAAAAGTGTGTGAACGCCCACAACATATGATAATGCGA 24259 Query 110391 GTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTA 110450 || || | || || || | | || | | || ||| | ||| ||||| | Sbjct 24258 GTGGCTGTCGGCATACACAAAGAGAATTTGGATGCCGTTTTGGAAACGTATGAACACAT- 24200 Query 110451 AGTAAAAAGAAAGCTATT----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506 || | || ||| | || ||||| ||||| || || || || || ||||| | | Sbjct 24199 -GTCACAA--AAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCG 24143 Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566 | ||||| | || || ||||| || || | ||||||||||| || || ||||| Sbjct 24142 ACCTCAATTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTA 24083 Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626 || | || ||| || ||| |||||| || |||| || ||||| | | Sbjct 24082 CGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTAT 24023 Query 110627 TCATGATATTCGCTCAAA-AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 | |||||||||| | | || | |||| | |||| || ||| | |||| Sbjct 24022 TTCCAATATTCGCTCCACCAACAGTTATATTCGCGGGA-CGAATGGAAGTTCGAATGGAA 23964 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 ||||||||||| | | || ||||| ||||| || ||| || ||||||||||| | Sbjct 23963 TTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGTGGTGGGA 23904 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| || ||||| || || |||||| | ||||| ||||| || Sbjct 23903 AGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGGCATGCGGATATCTTTGAGTTTC 23844 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||||| ||||| ||||| ||| |||| || |||| || ||||| |||||||| Sbjct 23843 TGGAACTACGTAAGAATCATGGAAATGAACTCCATCGAGCTCGAGATTTGTTTTATGCTC 23784 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||||| | ||| | || ||||||||||| |||| || Sbjct 23783 TTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGACAA 23744 >seq835 Length=76541 Score = 109 bits (120), Expect = 1e-18 Identities = 377/582 (65%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| || |||| || ||| || |||||||||||| | | || ||| | Sbjct 30367 TATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCAAGCTTTT 30308 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| | ||||| |||||| || | || || |||| ||| || || | | Sbjct 30307 GGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATATCGGACA 30248 Query 131553 ATGAAAAAGATTTTGTTTCCAAA---GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 |||||| | | ||| | |||| || | || ||||| || | |||||||| |||| Sbjct 30247 ATGAAAGACACTTTAT---CAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATTG 30191 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGT 131669 | | ||||||||| | || ||||||| || || | || || |||| || | Sbjct 30190 TCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGATGCT 30131 Query 131670 TCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTG 131729 | ||| ||||||| || | ||| ||| || || ||||||| |||||||||| Sbjct 30130 TTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTG 30071 Query 131730 AGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTC 131789 | | | ||| || | ||| ||| | | ||| | || | | | | | | Sbjct 30070 ATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACAATCC 30011 Query 131790 C-TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGG----ATTCAAGATGATTCCGC 131844 | ||| ||| || |||||| ||||||| | |||||| || ||| | || || | Sbjct 30010 CGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGT-ATGCCTC 29953 Query 131845 TAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC 131904 ||| | |||| | ||||| ||||| || ||||| || || || || || | Sbjct 29952 G---TTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATC 29896 Query 131905 TTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAA 131964 ||||| |||| |||||||| ||||| || ||||||||||||||||| | || || || Sbjct 29895 ATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAA 29836 Query 131965 TCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | | ||||| | ||||||| | | ||| ||| ||||| Sbjct 29835 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGC 29794 >seq162 Length=60852 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT-A 305392 |||||||| | || || || |||| |||||||| || ||||| ||| | ||||| | Sbjct 50513 TGTTCAATCGTCAGCCTTCTTTGCACAAAATGTCAATCATGGCACATCGGGCGAAAGTCA 50572 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGC--TTGTACGCCTTATAATGCGGATT 305450 | ||||| || ||||| || |||| ||||| ||| |||| |||||||| |||| Sbjct 50573 TGCCCTGGAGA-ACTTTTCGTTTCAATG--AGTGCGTTTGCTCGCCCTATAATGCCGATT 50629 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | |||||||| |||||||||||||| | || ||| || Sbjct 50630 TCGATGGAGACGAAATGAATATGCACCTGCCACAAACA 50667 >seq1341 Length=9302 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || ||| | |||||||| ||||| || |||||||| ||| | || | | Sbjct 3485 GATTTGGTGTTATTTAATCGTCAACCATCTCTGCACAAGATGTCTATCATGTCCCACAGA 3426 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAA--GTGCTTGTACGCCTTAT 305440 ||||| || || |||| | |||||||| | || || ||| || | || || Sbjct 3425 GTCAAGGTCTTCCACTGG-TCCACATTTCGTCTCAACTTATCGGTGAC-GT-CTCCCTAC 3369 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||| |||||||||||||||||| ||||||| || || ||| Sbjct 3368 AATGCAGATTTCGATGGAGATGAAATGAATCTGCATGTTCCGCAGTCA 3321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186627134263810