Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq221 145 2e-30 seq1306 143 7e-30 >seq221 Length=1203 Score = 145 bits (160), Expect = 2e-30 Identities = 362/543 (67%), Gaps = 30/543 (6%) Strand=Plus/Minus Query 17754 CATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCTTCACCAAGCC 17813 |||||| || || |||||| |||||||| | |||| |||||||| ||||||| Sbjct 1008 CATCCACAGGTTTGACAGGGCGAACAACGTCACCATCTGCGCGGTGTTCTTGGCCAAGCC 949 Query 17814 TCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACGGATGTTCTAC 17873 ||| ||||||| || || || |||||||| ||||||||||| |||||||| || || Sbjct 948 CCGAAAGCGCACTTTTTCATAGCCAAACTGGCGTTTGATGACCCGAAACGGATGCTCGAC 889 Query 17874 GCGAGCACGAATGCGCGCCTTGACCCGCTCCAACTC----ATCGACGAGCGCACCCGACA 17929 || |||| | |||||| || ||| | | |||| | | || ||| Sbjct 888 CTTGGCGCGAACCTGGGCCTTGGCCTTCTCGATTTTGCGGATCGCCTTGTACAAA--ACA 831 Query 17930 CGGTGTT-------CTTGTCCAAGGCGCGGCGTTTGCTCGGTCGCAAT--GCCACATGCC 17980 | | ||| ||| | | | || ||| || || ||||| |||| ||| | Sbjct 830 CTGCGTTTTCCGTGCTTTTTGTAAGTGCTGCG---GCG-GGCGGCAATCTGCCAAATGAC 775 Query 17981 AACGCACCTTCAACTTCTGCACCTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCGC 18040 || || || | | | ||||||||||| || | || ||| || || ||| Sbjct 774 CTTGCGCC--CAGCATGT-----TCTTCGCGCTTCTCAACCCCGGTGTAACCTGCGTCGG 722 Query 18041 CGAATACGTCGGCCTCCTTACCGTGCACCAACGCATGCG--CTTGCGTCACGTCGTTGAC 18098 || | || || |||| ||||||| || | || | ||||| ||||| || Sbjct 721 CGCAGACTACGTTTTCCTCGCCGTGCAGCA--GTTTGGCAACCTGCGTGACGTCTGCCAC 664 Query 18099 GTTGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTG 18158 ||||| || || | | |||| | |||||||| || || || | || |||| ||||| Sbjct 663 ATTGGCCGCTGTTACTACCACGCTGTGCACCAGGCCTGACTCGTCGTCGGCGCCGATGTG 604 Query 18159 CGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCG 18218 || || ||||||| ||||||||||||||||||| || |||||||| || ||||| Sbjct 603 AGCCTTAGCGCCGAAATAGTACTGGTTACCTTTCTTGGTTTGATGCATCTCAGGATCGCG 544 Query 18219 CTTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGT 18278 ||||| ||||||||||| ||||||||| |||||||| ||| ||||| | || Sbjct 543 TTTGCCATCTTTGTTCTTGGTCGAACTGGGCGCGTGAATCAGCGTGGCATCGACGATGGT 484 Query 18279 GCC 18281 ||| Sbjct 483 GCC 481 >seq1306 Length=1223 Score = 143 bits (158), Expect = 7e-30 Identities = 155/204 (76%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 18097 ACGTTGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCCGCATCCACGCCAATG 18156 ||||| |||||||| || | ||| | |||||||||||||| || || || |||||| Sbjct 528 ACGTTAGCGGCCGTCCCTACTACGCTGTGCACCAGCCCCGACGTGGCGTCTACACCAATG 587 Query 18157 TGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCG 18216 || || ||||| || || ||||| || || |||||| ||| ||| |||||||| || || Sbjct 588 TGGGCCTTCATCCCAAAGTGCCATTGATTGCCTTTCCTGGCCTGATGCATCTCAGGATCA 647 Query 18217 CGCTTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACC 18276 |||||||| | |||||| |||| |||||||| ||||| | |||||||| | Sbjct 648 CGCTTGCCTTCTCGGTTCTTGACCGAGGGCGGCGCGGCGATCAGGGTAGCGTCGACGATA 707 Query 18277 GTGCCCTCTTTGAGCAGGTAGCCC 18300 ||||| || ||||||| ||||||| Sbjct 708 GTGCCTTCCTTGAGCA-GTAGCCC 730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127866257503280