Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq835 275 5e-69 seq4418 152 4e-32 >seq835 Length=76541 Score = 275 bits (304), Expect = 5e-69 Identities = 628/919 (68%), Gaps = 36/919 (4%) Strand=Plus/Minus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 ||| ||| |||||||||| | |||||| | ||||| || ||| | ||| || || Sbjct 30399 TTTTCTTCGAGAAAATCCGAACCGCTTTGTCTTATTTCCGATACAACAATCTGAGATTTG 30340 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 | | ||||| || |||||| |||| |||||||| ||||||||| | |||||| | Sbjct 30339 GGACATGTATAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCA 30280 Query 43795 AGACTTAGCACATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTT 43852 ||| | | ||| || | || | | |||| |||| ||| ||||| || Sbjct 30279 TGACATGAATGACTGGCTT--AATATATCGGACAATGAAAGACACTTTATCAAACACGTG 30222 Query 43853 TTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG 43912 ||||| || ||||| || || || || || |||||||||||| | | | | ||| | Sbjct 30221 TTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTCGCCA-TGAATTTCAG 30163 Query 43913 CAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 || || ||||| | || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 30162 CAGTGAGGTTCAGATCCCCGAAGCTCGATGCTTTTACGGATTTCAAATTGCAATAGAAAA 30103 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| || |||||| |||| | |||| ||||| |||||||||||| || || Sbjct 30102 TATACACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACTGAAAA 30043 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 || | || | ||||| |||||| | || |||| ||| |||||||| | |||| Sbjct 30042 ACAGCATTTACTGTGCGCGATTGAAACAATCCCGTGCG-TTACCAATAAAGCACAATGGG 29984 Query 44091 CCCTTAAATGGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | | |||||| || |||| || || |||| |||| || | || || ||||| | Sbjct 29983 CGTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGG 29924 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGA 44206 || ||||| || || || || ||||| || ||| | ||||||||| | ||||||||| Sbjct 29923 CCGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCT-CTATATTTTGGCTGAAGAAACGA 29865 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || ||||||||||| | |||||||||||| | || |||||||||||||| ||||| Sbjct 29864 GGATTGATGCCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACAT 29805 Query 44267 TGCGATTTTGCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG- 44323 || || ||||| || || |||| | | || | | ||||| |||| | | | Sbjct 29804 TGTGACTTTGCATGTCTGATGTACTCG--AAACTGGTA---AATAAG-CTTCCAGAAGGC 29751 Query 44324 ACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACA-GC 44382 | ||| | || || || || || | || |||||||||||| | || | | | Sbjct 29750 TCTATTCATGCAATCATTTCCGACGCCGTTATCATCGAACAAGAATTTGT-ACGAGATTC 29692 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | | || || | |||| ||||||||| | ||||||| ||||| || || | | Sbjct 29691 ACTTCCAGTCGAGCTAATTGGAATGAATTCAAGTTTGATGGGTCAATACATCGAGTTTGT 29632 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA--CTATAT---TGTACAAAAC 44497 || ||||| || | | ||| | ||| | | || ||||| | | || | Sbjct 29631 GGCGGATCGATTGTTACATGCACT---TGGCG-TCAGCAAGTTATATCAAGCTTCTAATC 29576 Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557 || ||||| | ||||| | || || || |||| ||||||||||||||||| |||||| Sbjct 29575 CC-TTTGACTGGATGGATATGATATCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGC 29517 Query 44558 GTTGGAGAATATCAGCGAA 44576 |||||||||||| ||||| Sbjct 29516 GTTGGAGAATAT--GCGAA 29500 >seq4418 Length=20304 Score = 152 bits (168), Expect = 4e-32 Identities = 222/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 |||||||| || || | ||| ||||| ||||| || || |||||||| || || Sbjct 17547 CGACGTATCATCTTATCCGCTTGGAATCCAACCGATTTAGCCGAAATGGCATTACCTCCC 17606 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| || | || || ||||||||| ||||| ||| | ||||| ||| |||| || Sbjct 17607 TGTCATCTGATGTGCCAATTTTACGTTGCAAATGGGGAATTATCATGCCAAATGTACCAG 17666 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 |||| | ||| || || || || || || ||||| || || || || || || | || Sbjct 17667 CGATCCGCTGATATTGGTCTGGGCGTTCCATTTAATATTGCTAGCTACGCGCTTTTGACA 17726 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||||| || || | |||| || || |||||||| | | |||||| Sbjct 17727 AAAATGATTGCACACGTGACTGATCTCCAACCCGGCGAGTTTGTTCATGTGATCGGAGAT 17786 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| ||||| |||||| | || ||| || | |||||| ||| | || | Sbjct 17787 GCCCATATCTACATGAATCACTTGGAACCGCTACAGGCACAACTTGAACGCACTCCACGC 17846 Query 41304 CCATTTCCAACGCT 41317 || |||||||| || Sbjct 17847 CCGTTTCCAACACT 17860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397396854821050