Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq500 145 8e-30 seq10857 116 4e-21 seq310 109 6e-19 >seq500 Length=28399 Score = 145 bits (160), Expect = 8e-30 Identities = 303/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 ||||||| ||||||||| || || || || || ||||| || || ||| || ||||| Sbjct 24195 CAAAAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCGACCTCAA 24136 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 | ||| || || || | | ||| | ||||| || ||||||||||| ||||| ||| Sbjct 24135 TTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTACGACACG 24076 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAAC 53443 || || | ||||| || || |||||| | || ||||| || || || || Sbjct 24075 CTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAAT 24016 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | || | | | || || |||||||| || | ||||||| || || Sbjct 24015 ATTCGCTCCACCAACAGTTATATTCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCA 23956 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| || || ||||| |||| || || ||||| | || |||||||||||||| || Sbjct 23955 ATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGTGGTGGGAAGCGGAAA 23896 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||||| || || || || || ||||| ||||| || || || | |||||||| || || Sbjct 23895 GGGTCTTTTGCAATTTATCTAGAGCCCTGGCATGCGGATATCTTTGAGTTTCTGGAACTA 23836 Query 53624 CGTCTGAATCAGGGTGACGAA-GAGAT-GCGCTGCCGTGACCTGTTTACAGCTCTGTGGA 53681 ||| |||||| || | ||| || | ||| || || ||||| ||||| |||| Sbjct 23835 CGTAAGAATCATGGAAATGAACTCCATCGAGCT--CGAGATTTGTTTTATGCTCTTTGGA 23778 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGA 53709 | || || || || ||| || ||||| Sbjct 23777 TCCCCGATCTGTTTATGAAACGTGTGGA 23750 >seq10857 Length=49704 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||| ||||| ||||| | ||| || ||||| || |||||| || || ||||| || || Sbjct 7959 CGTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTG 7900 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || | |||| ||| |||| || || | | ||| |||| || || Sbjct 7899 ACCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAAC 7840 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || ||||| || ||||| || |||||||| || ||||| ||||| Sbjct 7839 AATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACAATATCC 7780 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| || || ||||| ||| | || || ||||||||||| ||| | | || Sbjct 7779 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 7720 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||| || || |||| |||||| ||||| Sbjct 7719 CTTCCGTTGAGATGTTTTCAACCCGTC 7693 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || || |||| ||| |||||||| || ||||| ||| || || |||||||| Sbjct 7958 GTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTGA 7899 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | || | || | ||| |||| || ||| ||| || |||| ||| ||| Sbjct 7898 CCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAACA 7839 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCC 117483 || ||| || || ||||||||||| |||||||| || ||||| | || || || Sbjct 7838 ATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACA-ATATCC 7780 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 |||||||| || || ||||| || | || || |||||||| || || | | || Sbjct 7779 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 7720 Query 117544 CTTGCGCTGA 117553 ||| || ||| Sbjct 7719 CTTCCGTTGA 7710 >seq310 Length=103442 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| || |||||| | || |||||||||||| Sbjct 22656 GTGAAAATGTAACGAGGGCTAGCAGCATCTTTCCCACCAAGTATCCGAGTACCGAATTGT 22715 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || ||| || ||| || || || ||||| |||||||| || | Sbjct 22716 CCATTTGGAGACAATAGATTCGTATTATTACTCCCGGTAAAGTCTTGAGCCATATTAATG 22775 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||||||||| | || ||||| | || || || Sbjct 22776 ATCGTTCCATGCAGACTTGCTTCTCCATGGTGATAAGACGAATGCTCTGATACATAACCG 22835 Query 117485 GCCAGCTGAGCCACCTTCATGTC 117507 || || || ||||| || || || Sbjct 22836 GCGAGTTGTGCCACTTTGATTTC 22858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547132481158000