Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq378 168 8e-37 seq2154 134 2e-26 seq3863 118 1e-21 seq3650 107 2e-18 seq469 102 9e-17 seq500 87.8 2e-12 >seq378 Length=86116 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || |||||||| | || || || || Sbjct 294 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 353 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| ||||||| || || |||||||| || ||||||||||||||||| Sbjct 354 AGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 413 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| |||||||||||||| ||||| ||||| || || | || || || || || || || Sbjct 414 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAA 473 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || |||||||| || | |||||||| ||||| Sbjct 474 CATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 521 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || | || || || ||||| ||| | || || |||||| Sbjct 66 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATC 125 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || || ||||||||||| ||||||||||| || || Sbjct 126 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 185 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || || ||||| ||||| || || | || || || || || || || Sbjct 186 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 245 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || | || | |||||||| |||||| Sbjct 246 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGA 294 >seq2154 Length=27549 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || ||||| || || || ||||||||||| || ||| Sbjct 4083 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 4142 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| ||||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 4143 CGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 4202 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || || ||| | ||||| | || || || || || || || Sbjct 4203 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 4262 Query 27585 TGTCCAAAA 27593 ||||||| Sbjct 4263 CATCCAAAA 4271 >seq3863 Length=215 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || || || ||| | || || |||||| Sbjct 150 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 91 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || || ||||||||||| ||||||||||| || || Sbjct 90 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 31 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||| ||||| || || ||||| || ||||| Sbjct 30 GCAACGTCTGATCTTCGCTGGAAAACAACT 1 >seq3650 Length=4340 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || |||||||| || ||||| || ||| | || |||||||| Sbjct 149 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 90 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||| ||||| || ||||||||||| || ||| Sbjct 89 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 30 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || ||||| || || ||||| || ||||| Sbjct 29 CAACGTCTGATCTTCGCTGGAAAACAACT 1 >seq469 Length=169936 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || ||||| || || || || |||| || | |||| ||| | ||| || Sbjct 159069 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 159128 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||| Sbjct 159129 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 159188 Query 27553 CTCGAGGATGATCGTACCCTA 27573 || || || | |||||| ||| Sbjct 159189 CTTGAAGACGGTCGTACTCTA 159209 >seq500 Length=28399 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 80014 TGAATTGGCTTG-----GCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGC 80068 |||||||| ||| || ||| || || || ||||||||||| || || ||||| | Sbjct 22527 TGAATTGGATTGCATCTGCTCTTGGACGTGTTCGGAGATAGTACATTCCTGTTTTGAGAC 22586 Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGA 80128 | || ||||| |||| | ||||| ||| |||| || | || |||| | ||| Sbjct 22587 CTTTTTTCCATGCGTAGAAATGCATCGAAGTGAGTTTACTGACAGTCGGGTCGGCAATGT 22646 Query 80129 AGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA 80188 || || || || ||| |||||| ||| | || || ||||| || ||||| || | || Sbjct 22647 GAATATTAAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAA 22706 Query 80189 TTGACTTTTGTGGAATTTCCCATACTGT 80216 | | |||||| |||||||| ||||| Sbjct 22707 TCGCCTTTTGCTTGATTTCCCAAACTGT 22734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570223356375200