Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2154 122 6e-23 seq378 122 6e-23 seq7101 84.2 1e-11 seq3650 84.2 1e-11 >seq2154 Length=27549 Score = 122 bits (134), Expect = 6e-23 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 23600 AATTACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 || ||||||| ||||||||||||||| || || ||||| || ||||| |||||||| || Sbjct 4072 AACTACTTAAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAG 4131 Query 23659 GTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || || | ||||| | || ||| | || | || | || ||||| ||||| | Sbjct 4132 GTCGAATCATCCGACACGATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGAAT 4190 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || ||||||||||| || || || || |||||| |||| |||| || || | Sbjct 4191 TCCTCCCGACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCT 4250 Query 23778 AGGCGATTACAACATACAAAAAG 23800 | ||||||||||| ||||||| Sbjct 4251 CGCGGATTACAACATCCAAAAAG 4273 >seq378 Length=86116 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || || | ||||| || || | Sbjct 294 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 353 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | ||||||||||| | || ||||| | Sbjct 354 AGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGACC 412 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| |||| |||||||| |||||||||||||||| |||||| | | ||||||| Sbjct 413 AGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACA 472 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 473 ACATTCAGAAAGAGTCTAC 491 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || |||||||| || ||| | ||||| || || | Sbjct 66 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATC 125 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 126 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 185 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||| |||||||| ||||||| ||| || | | |||||||| Sbjct 186 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 245 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || || || || || Sbjct 246 CATCCAGAAAGAATCAACGTTGCACTTGGT 275 >seq7101 Length=52731 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || || ||||||||| | || ||||| || |||||| ||||||| | || Sbjct 35658 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 35599 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || |||| ||||||||||| || ||||| ||| |||||| | ||| || | || || Sbjct 35598 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 35539 Query 23832 AGGAGG 23837 || || Sbjct 35538 TGGTGG 35533 >seq3650 Length=4340 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || |||||| | |||||||| || | Sbjct 149 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 90 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || ||| ||||||||||| | || || ||||| Sbjct 89 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 30 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACT 23759 || ||| | || || || || |||||||| Sbjct 29 CAACGTCTGATCTTCGCTGGAAAACAACT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337959301002680