Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 181 3e-40 seq378 132 1e-25 seq392 114 3e-20 seq2154 111 4e-19 seq144 104 6e-17 seq3650 93.3 1e-13 seq36 89.7 1e-12 seq3863 86.0 1e-11 seq117 84.2 5e-11 >seq2 Length=846 Score = 181 bits (200), Expect = 3e-40 Identities = 216/289 (75%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || ||||||||||| ||||||| ||||| || |||| ||||||| | | ||||||| | Sbjct 759 ACTTTATATTTAATTTTTGGTGCTTTTTCAGG-ATTAGTAGGTACAACACTTTCTATTTT 701 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| ||| || || | |||||| ||| | || Sbjct 700 AATTCGTATGGAATTATCACAACCTGGTAATCAGATTTTTATGGGTAATCATCAATTATA 641 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || | || || ||||| || ||||||||||| ||| | |||||||| ||| | Sbjct 640 TAATGTAGTTGTAACAGCACATGCGTTCGTTATGATTTTTTTTATGGTTATGCCTGTTTT 581 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAA-TGATTGGTGCTCCTGATATGGCTT 7678 || || ||||| |||||||| || | ||||||| |||| || || ||||||||||||| Sbjct 580 AATTGGAGGTTTTGGAAATTGGTTTATACCTTTAATTGATAGGAGCCCCTGATATGGCTT 521 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| || | || |||||||||||||| ||| | || ||||| ||||| Sbjct 520 TTCCTAGAATGAATAATATAAGTTTTTGGTTATTGCCTCCTTCTTTATT 472 Score = 105 bits (116), Expect = 2e-17 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 370672 TTCAGGATGACC-AAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTG 370730 |||||||||||| |||||| || |||||||||||||| | |||||||| ||||| || | Sbjct 70 TTCAGGATGACCGAAAAAACCAAAATAAATGTTGATATAATATAGGATCACCTCCACCAG 129 Query 370731 ATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||| |||| |||||| ||||||||||| ||||| |||| Sbjct 130 AAGGATCATAAAAAGAAGTATTTAAATTTCTATCTGTTAATAACA 174 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 371385 TAAACCAGGTACTCTCATATTAA-ATATCGTAGTAATAAAGTTTATAGCGCCTAG-AAGA 371442 |||||| || ||||||| || | |||| || | || ||| ||||| || |||| || | Sbjct 271 TAAACCTGGAGCTCTCATGTTTATATATAGTCGAAAGAAAATTTATTGCTCCTAATAAAA 330 Query 371443 GAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGA 371502 ||||| || || | | |||||||||||| ||||||||||| || ||| || || || Sbjct 331 GAAGAAATTCCAGATAAATGTAAACTAAAAATTGCTAAATCTACCGAAGGACCTGAATGT 390 Query 371503 GCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 ||| ||| | ||| || || ||||| || || || |||| Sbjct 391 GCTTGTATACTAGATAAAGGAGGATAAACAGTCCAACCTGTTC 433 >seq378 Length=86116 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | || Sbjct 288 ACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGT 229 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || |||||||| || || || |||||||| || ||||| || || || ||||| || Sbjct 228 TCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 169 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || || |||||||| | || || || || Sbjct 168 TTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAA 109 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| ||||| | || | |||||| Sbjct 108 AGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 66 >seq392 Length=423 Score = 114 bits (126), Expect = 3e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||| ||||| ||||| || Sbjct 9 GAAAATTTGACCATCAGTAATTGAAATAACATTAGTTGGTATATATGCAGATACATCTCC 68 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||| ||||| | || |||||| ||||||| || |||| || | ||||||||| Sbjct 69 TGCTTGAGTTTCTATAATAGGTAAAGCTGTTAAAGAACCACTTCCCATTTTTTTATTT 126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || || || || |||||| |||||| |||||||||||||||||||||||||||||| | Sbjct 326 GCTCCTTATACTGGTTGTACTATAGGTGAATATTTTAGAGATAATGGTAAACATGCTGTT 267 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| |||||| Sbjct 266 ATTTTTTATGATGATTTATCAAAACAA 240 >seq2154 Length=27549 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| |||||||| || | |||| || || || | || || || ||||| | Sbjct 4273 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 4214 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||||||||||| ||||| |||||||||||||| ||||| ||||||| | Sbjct 4213 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 4154 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| ||||| || | ||| || || | ||||| || || || || | || || | || Sbjct 4153 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 4094 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 4093 AAATCTGCATT 4083 >seq144 Length=258 Score = 104 bits (114), Expect = 6e-17 Identities = 86/102 (84%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 6772 AGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG---GGCAGCA 6827 |||| ||||||||||||||||||||| ||||||||||| ||| ||||| ||||||| Sbjct 223 AGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAA-CTTTTAAAAAAAAGGCAGCA 165 Query 6828 GTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||| |||| || ||||||| |||||||||||||| || ||| Sbjct 164 GTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 123 >seq3650 Length=4340 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || || || ||||||||||| || ||||| || || || ||||| ||||| |||||||| Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGA 60 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| ||| ||||| |||||||| | || || || || ||||| ||||| Sbjct 61 ATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTT 120 Query 225685 CCCGTCAAAGTTTT 225698 || || | ||||| Sbjct 121 CCAGTAAGCGTTTT 134 >seq36 Length=550 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7726 TTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTT 7785 |||| || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| Sbjct 97 TTTCAAGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTT 38 Query 7786 ATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTT 7822 | | || |||||| || |||||| ||| |||||| Sbjct 37 GTGTAGACTCCCGTCAATTCCTTTGAATTTCAACCTT 1 >seq3863 Length=215 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || || || ||||||||||| || ||||| || || || ||||| ||||||||||| ||| Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGG 60 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| |||||| || || ||||| || | || || || || || || || || Sbjct 61 ATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTC 120 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || |||| || || | || | ||||||| Sbjct 121 CCAGTCAGCGTCTTAACAAAAATTTGCATT 150 >seq117 Length=754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 371784 TTTTGGTAGGCTCTTTATCCTTAACTGGATTTCCGTTTTTGACCGGTTTCTATTCTAAAG 371843 |||| |||| |||||||| |||| |||||||| ||||| | ||||| |||||||||| Sbjct 492 TTTTAATAGGTTCTTTATCTTTAATAGGATTTCCTTTTTTAAGTGGTTTTTATTCTAAAG 433 Query 371844 AAGTAGTTTTAGAGATAGCATTTTCTAAGTTTTCGATTAATA-GtttttttATTTATTGA 371902 | || | ||||| ||||| |||||| |||||| ||| | || |||| |||||| Sbjct 432 ATTTAATATTAGAAATAGCTTTTTCT-AGTTTTAATATAACAGGTCATTTTGCTTATTGG 374 Query 371903 TTA 371905 ||| Sbjct 373 TTA 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192344639673740