Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq835 273 2e-68 >seq835 Length=76541 Score = 273 bits (302), Expect = 2e-68 Identities = 635/940 (68%), Gaps = 28/940 (3%) Strand=Plus/Plus Query 23160 TTAAAAATCTTCATCTAAAGTGAATT-TCACTGCTTTATCACTATTCAT-AACACCCATT 23217 ||| |||||| ||||||||||||| | || |||| || | || |||||| | Sbjct 29442 TTAGAAATCTGCATCTAAAGTGAAAACTTGCTCCTTTG-CAG-AGACACCAACACCAGAT 29499 Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 || |||||| ||||| ||| | || ||||| ||||| || || | | ||||| | Sbjct 29500 TTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATATCATA 29559 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTT-TAA 23336 ||||| | ||||| |||||||||| | ||||| | | | | || | | | ||| Sbjct 29560 TCCATCCAGTCAAAGGGATTAGAAGCTTGATATA-ACTTGCTGACGCCAAGTGCATGTAA 29618 Query 23337 AAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAG 23396 | | ||| || ||||| || || ||||||| ||||||| | || || || ||||| Sbjct 29619 CAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAG 29678 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 | ||||||| | ||| || ||| || ||| ||| ||| || || ||| || Sbjct 29679 CTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGAT 29738 Query 23457 TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA--ACAATAAACATGCA 23514 | | |||| |||| | | | ||||| | | | ||| | ||||||| Sbjct 29739 TGCATGAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCA 29796 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 || ||||||||||| |||||||| | ||| || | ||||| ||||| | ||| ||| Sbjct 29797 AAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGC 29856 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGAAAATACC 23633 || ||||||||||| || | ||||||||| | |||| ||||||||||| || || || || Sbjct 29857 ATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCC 29915 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA---ATCAGAAAT 23690 || || ||||||||||| || | | | |||| | |||| | ||| | Sbjct 29916 TTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA--- 29972 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATT--TTACACACTCAATTGTTTCAATTGCTTTT 23748 |||||| | ||| | || || ||| | || ||| ||||||||||| || Sbjct 29973 CCATTTCAACGCCCATTGTGCTTT--ATTGGTAACGCACGGGATTGTTTCAATCGCGC-- 30028 Query 23749 AAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | || ||| | || |||| | |||| | || ||||||||||| | ||| |||| Sbjct 30029 -ACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATAC 30087 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 | ||| || || |||||||| || ||||| ||||| || ||||| |||| |||||| | Sbjct 30088 ACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGG 30147 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||||| ||| | || | | || | |||||| || ||||| |||||||| || Sbjct 30148 ATCTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCT 30207 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 |||||||| || | || | ||| ||||| |||||||||| |||| || ||| Sbjct 30208 GCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAG 30267 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 ||||| || || | ||||| | ||| || | |||||||| |||||| || | Sbjct 30268 TCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTC 30327 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATA 24085 |||||||| |||||| ||| |||||||| ||||||| Sbjct 30328 TTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATA 30367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521408407894000