Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq378 154 4e-32 seq3650 120 7e-22 seq6259 111 4e-19 seq469 105 2e-17 >seq378 Length=86116 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || |||||||| || || | || || || |||||| Sbjct 70 CAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATCAGAC 129 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| |||||||| ||||| || |||||| Sbjct 130 ACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAA 189 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||| || ||||| ||| | || ||||| ||||| ||| || Sbjct 190 CGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAACATC 249 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||||||||| |||| |||| Sbjct 250 CAGAAAGAATCAACGTTGCA-CTTG 273 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| || || | || |||||| ||||| Sbjct 298 CAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCAGAT 357 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct 358 ACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAA 417 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| ||||| || ||||| ||| | || ||||| ||||| ||| | Sbjct 418 CGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAACATT 477 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || ||||| || Sbjct 478 CAGAAAGAGTCTACGCTTCATCTGGT 503 >seq3650 Length=4340 Score = 120 bits (132), Expect = 7e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| || || ||||| || ||||| | || || || |||||| Sbjct 146 CAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCAGAC 87 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| |||||||||||||| ||||| || |||||| Sbjct 86 ACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAA 27 Query 178044 CGACTTATCTTCGCCGGAAAACAGCT 178069 || || |||||||| |||||||| || Sbjct 26 CGTCTGATCTTCGCTGGAAAACAACT 1 >seq6259 Length=113 Score = 111 bits (122), Expect = 4e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 178020 GAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 |||||||| ||||| || |||||||| || |||||||| |||||||| || ||||| ||| Sbjct 1 GAAGGAATTCCTCCTGATCAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGA 60 Query 178080 AGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 | |||||||| ||||| ||| |||| ||||||||||| |||| Sbjct 61 CGTACTCTTGCGGATTACAACATCCAGAAAGAATCAACGTTGCA 104 >seq469 Length=169936 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||||||||| || || ||||| || ||| | ||||| || || || ||||| || Sbjct 159068 AGGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAA 159127 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 |||||| ||||| |||||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 159128 GATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACA 159187 Query 178067 GCTCGAAGATGGAAGGACTCT 178087 || ||||| || | ||||| Sbjct 159188 ACTTGAAGACGGTCGTACTCT 159208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203542887538740