Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3539 116 8e-21 seq3378 105 1e-17 seq476 91.5 3e-13 >seq3539 Length=84347 Score = 116 bits (128), Expect = 8e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 319854 AGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGC 319913 ||| || || ||||| || |||||||| | || || | |||||| ||||||||||| Sbjct 21430 AGACGGAAATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACCGCA 21489 Query 319914 CCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTT 319973 || ||||| ||||| ||||| || || | ||| | |||| ||||| | |||||| Sbjct 21490 TCCATTTGGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTT 21549 Query 319974 CAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||| ||||| | |||||||| |||| ||| || ||||||| ||| |||||| Sbjct 21550 CAGTAGAATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 21601 >seq3378 Length=124254 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| |||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 90 GCCTGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 149 Query 165770 CCCACGATGGGCA 165782 |||||| |||||| Sbjct 150 CCCACGGTGGGCA 162 >seq476 Length=77562 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| |||||||||||||||||||||| | ||||||| | ||||||||||||||||| Sbjct 81 TGCCTTTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAG 140 Query 165769 CCCCACGATGGGCAT 165783 ||||||| |||||| Sbjct 141 CCCCACGGAGGGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057745607307920