Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq650 132 7e-26 seq5374 111 2e-19 seq1476 111 2e-19 seq527 104 4e-17 seq2942 102 1e-16 >seq650 Length=49279 Score = 132 bits (146), Expect = 7e-26 Identities = 275/406 (68%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 ||||| | || ||||| |||| || || ||||| ||| || |||| | || | Sbjct 30280 TGATTCATGTAGATATGGGCATCTCCGATCACATGAACAAACTCGCCGGGTTGGAGATCA 30339 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 || | ||||||||||| | ||||| | || ||||||| ||||||||| || || Sbjct 30340 GTCACGTGTGCAATCATTTTTGTCAAAAGCGCGTAGCTAGCAATATTAAATGGAACGCCC 30399 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 | ||| |||||||| |||| || |||||||| |||| | ||| ||| || Sbjct 30400 AGACCAATATCAGCGGATCGCTGGTACATTTGGCATGATA---ATTCCCCATTTGCAACG 30456 Query 205564 TGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | |||||| || | || |||||| || |||| |||| | | | ||| | ||||| Sbjct 30457 TAAAATTG-GCACATCAGATGACAGGGAGGTAATGCCATTTCGGCTAAATCGGTTGGATT 30515 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| || | ||| || ||| || | | | | | | |||| | ||| | ||| | || Sbjct 30516 CCAAGCGGATAAGATGATACGTCGACAATTTTGGTCAGTTTTGAGTTTGTGTATCACATC 30575 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 | | ||||||||| || || | |||| | || |||||| | || | ||||| Sbjct 30576 GGCGAGTTGATCAAAGCCCTGGCCACTGTAATCCGCATGCATATCTGTGTAACTTGCACC 30635 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 ||||||||||||||||| || || | ||| |||||||| |||||| Sbjct 30636 GAAATGACGCCATTGAAAGCCGTAGATTGGTCCTAAATCGCCTTCT 30681 >seq5374 Length=4546 Score = 111 bits (122), Expect = 2e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || || || || || || || || ||| | || |||| | Sbjct 4206 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 4265 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || |||| |||| || |||||||| |||||||| || || |||||| Sbjct 4266 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 4325 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || || || || ||||||||| |||| || | || || | | ||||| Sbjct 4326 CAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTAC 4385 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || || ||||||||||| ||||| || || ||||| | || ||||| || ||| | Sbjct 4386 AACATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGAATGCAAATT 4445 Query 124776 T 124776 | Sbjct 4446 T 4446 >seq1476 Length=9414 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | || || |||||||||||| | || | || || Sbjct 9298 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATC 9239 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || || || ||||| || || |||||||| Sbjct 9238 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 9179 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || || |||||| |||| || | ||||| | | ||||| || Sbjct 9178 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 9119 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||||||||| ||||| ||||| ||||| | || ||||| || ||| || Sbjct 9118 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAATGCAAATTT 9060 >seq527 Length=46368 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || || ||||| | || |||||||| || |||||||| || ||| |||| Sbjct 8259 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 8318 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||||| ||||| || || || |||||| || || ||| ||||| |||| ||||| Sbjct 8319 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 8378 Query 124760 AGGTGGTATTAAAAA 124774 |||||| ||| || Sbjct 8379 TGGTGGTGGTAAGAA 8393 >seq2942 Length=30195 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||| || || ||||| || ||| | ||| | ||| || Sbjct 17398 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 17457 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||| |||||||| || ||||| || || || || || Sbjct 17458 CGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 17517 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| |||||||||||||| ||||| | ||||| | | ||||| || Sbjct 17518 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 17577 Query 124718 TATTCAAAAAG 124728 || ||||||| Sbjct 17578 CATCCAAAAAG 17588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755401380531200