Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1503 208 7e-49 >seq1503 Length=45688 Score = 208 bits (230), Expect = 7e-49 Identities = 567/858 (66%), Gaps = 30/858 (3%) Strand=Plus/Plus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 |||||| | ||| | || ||||| || ||||||||||||| | ||||| | ||||| Sbjct 34007 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 34066 Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC--ATCCCAATTCCAAC-AATAA 16065 | ||||| ||||| ||| | ||| | || | |||| | || || || Sbjct 34067 CCAGTCAAAGGGATTA---GAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAA 34123 Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 || |||||||||||| || || || || ||| ||| | |||||||| |||| | Sbjct 34124 TCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTC 34183 Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AATGATTAT 16182 || || | || ||| || ||| | || ||| || |||| || || ||||||| Sbjct 34184 GACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGC 34243 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAA---CATTATACAAGC 16239 || | || | || ||| | || || |||| | ||| | ||| || Sbjct 34244 ATG----AATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGC 34297 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| |||||||| | |||||| || | ||| || | ||| |||||||| ||| || || Sbjct 34298 AAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGG 34357 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| | ||||||||| || | ||||||||||| | ||||| || || || || || || Sbjct 34358 CATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCC 34417 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat--- 16416 ||| || || ||||| || |||| || || | ||| | |||||| || Sbjct 34418 TTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACG----AGGCATACTTTGGATCGC 34473 Query 16417 -ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 |||||| ||||| | |||||| | |||| || || | || || || | Sbjct 34474 ACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACA 34533 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 ||||| | |||||| | |||| || || ||||| || | ||| ||||| || Sbjct 34534 GTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTT 34593 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || || ||||| || ||||| || ||||| || |||||||||| |||||||| || | Sbjct 34594 CCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCT 34653 Query 16596 GTACTTCAGAG-TAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 | || ||| | | ||| || | || | ||||| || || |||||||| || ||||| Sbjct 34654 GAACCTCACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGC 34711 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||| || || | | |||||| ||||| | | |||| || || || | || | |||||| Sbjct 34712 AAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTC 34771 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | | || | ||||||| |||||| | |||||||| || | || || || Sbjct 34772 ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTT 34831 Query 16774 ATACATTTTCCATATGTC 16791 |||||| | ||| || || Sbjct 34832 ATACATGTCCCAAATCTC 34849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462478560382400