Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3351 210 2e-49 seq1503 172 5e-38 seq1476 122 8e-23 seq2942 93.3 4e-14 >seq3351 Length=46634 Score = 210 bits (232), Expect = 2e-49 Identities = 1159/1835 (63%), Gaps = 45/1835 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || ||||| ||||| || ||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 39551 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 39492 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | ||| | | |||| | | |||| | ||| | || ||||||||| || Sbjct 39491 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 39432 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCAT----CGACATTTCCCATAC 22320 |||||||||||||||| ||||| | | ||| ||| | | |||||||| || Sbjct 39431 TACGCTCCTCGATCGGCAGCCATGTCCA-AAAT---CGCCTTTTGCTTGATTTCCCAAAC 39376 Query 22321 GGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 || |||||| || | | | ||| || |||| | || ||||| ||| Sbjct 39375 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCG 39316 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGT-TCCACAAACCGATGGCGGTCAAATCTT 22439 || | | | ||| ||| || ||| | | |||||||| || | | | |||| Sbjct 39315 ATCGCGAAGGATTTGATTCCGAA-CGTCTGATGTCCACAAATTCATCTCAATAAGCTCTT 39257 Query 22440 TGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | |||| ||| || | | ||| || || | | |||||| || | | | |||| Sbjct 39256 CCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGT 39197 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| |||||||| |||| ||| || || || || || ||||| || || ||||| | Sbjct 39196 TGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTG 39137 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGC 22618 ||||||| || | ||| | ||||||| | ||||| | | | || ||| || | | Sbjct 39136 GCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTA-CTTGCTCTTTCAAC 39078 Query 22619 ATCGACCAGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 | ||| ||||| || |||| || | || | ||||||||| |||| || Sbjct 39077 TGCTTCCAATCCCATCGACCGGAATCGGGAATGAC---CTGCCACATATCAAATTGAAAG 39021 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAG 22734 | || ||||| | || || | || | |||||||| || | || || || | Sbjct 39020 ATACCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCC-GAGTTCCCGTGCCAA 38962 Query 22735 TTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 ||| | || |||| ||| || |||| || || || || |||| ||||| | || Sbjct 38961 TTCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTC 38902 Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 | || || |||||| | || | || ||||| | |||| || || | ||| || Sbjct 38901 GCGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTG 38842 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATA 22914 |||||| || || |||||||| | | | |||| ||||| ||| || || | ||||| Sbjct 38841 AACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATA 38782 Query 22915 CCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNN 22974 |||| ||| || || |||| | ||| | || || ||||| || || Sbjct 38781 ATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAA 38722 Query 22975 NNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGAC--GGCGATCGAGGCA 23032 |||| | ||| | | ||| ||||| | ||||| ||||| || || Sbjct 38721 TTTTGCAAATT--GAAATTCTTTCTGATAC-ACAAA--TTTTGACAATGCGATGGAAGCC 38667 Query 23033 AGATTGCATACGGCCACCTCGTCTTTGGA---CGTGTACTCTACAATTTCGGTACATAGA 23089 | ||||||||| |||| | |||||||| | |||||| | ||||| || ||| Sbjct 38666 AAATTGCATACTGCCA---CTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGA 38610 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||||| | || || || | ||| ||| ||| ||| ||||| || | || ||| Sbjct 38609 TTGCTTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTG 38550 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || ||||| |||||||| || ||||| | ||| || | || || ||||| | Sbjct 38549 TAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACAATTGC 38490 Query 23210 TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | ||| ||| || | || || ||||||||||| || ||||| || Sbjct 38489 TGGGCTTTGACA-GTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATC 38431 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 ||||||| || | || || | || | | ||||||| | | |||||| Sbjct 38430 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 38371 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 | || | ||| || ||| ||||||| ||||| || ||||| ||||| || |||| Sbjct 38370 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 38311 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || || || || || || || ||||| | |||| ||| || || | Sbjct 38310 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 38251 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 ||||| ||||| ||||| || |||| ||||| | || | ||| ||||| || Sbjct 38250 ATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTG 38191 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 ||| ||||| || || |||| ||| |||| | ||||| || || | || || || Sbjct 38190 ATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACT 38131 Query 23569 GCCGCCTACG-CCCGCCACACTCGAACCTTTTGCT----CGAACGTTGTGAACGTGGAAA 23623 | | | || ||||| | | | || ||| | |||| ||| || || Sbjct 38130 TC--CATTCGTCCCGCGAATAT---AACTGTTGGTGGAGCGAATATTGGAAATACTGACG 38076 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || || | || || || ||| ||||||||||| |||||||| ||||| Sbjct 38075 CCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCG 38016 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| || |||| | | | | |||||||| || | ||| | | ||||| Sbjct 38015 TCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTT 37956 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||| || ||||| | || ||||||||| | | ||||| | | ||| Sbjct 37955 CCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATAC 37896 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || | |||| || | | |||| |||||| |||| || || ||||| ||||| Sbjct 37895 GTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATA 37836 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | ||| || | || | || || | |||||||| || | || ||| Sbjct 37835 TGTTGTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTT 37776 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 ||||| ||||||||||| || | |||||| | ||| Sbjct 37775 TTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 37741 >seq1503 Length=45688 Score = 172 bits (190), Expect = 5e-38 Identities = 588/895 (66%), Gaps = 50/895 (6%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 34876 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 34817 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 34816 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 34757 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| || ||| | ||||| |||||||||||||| || || || || |||| Sbjct 34756 TCGGACAAT--GAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 34699 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGC 57775 | ||||| || || ||| | | | | || ||||| || | || || | | || || Sbjct 34698 GAATTGTCAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGC 34641 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||||||||||||| | || || ||||| | || || ||| |||||||| | Sbjct 34640 TCGATGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 34581 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAAC-GACGAGAAACGTAGACTGTTCAACGCGAT 57892 | | || ||||| ||| | || || |||| || | | | | ||||| |||||| Sbjct 34580 ATTGATTGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGT---GCGCGAT 34524 Query 57893 CGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAAA 57947 |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| || Sbjct 34523 TGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAA 34465 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 || ||| |||| || || || | | || || || ||||||||||| || || Sbjct 34464 AG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTT 34409 Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || || || ||| | ||||||||| |||||||||| || ||||||| || || Sbjct 34408 TTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACT 34350 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||| | || || || || || || ||| ||| ||||| || || Sbjct 34349 TTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCT 34290 Query 58127 AATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACCG 58185 |||||||| | | || ||||| | | | || || || || | || || ||| Sbjct 34289 GATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCCG 34231 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | || || |||||| | || ||||| || | || || || | | | || | Sbjct 34230 ACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGAA 34171 Query 58246 TGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTC 58301 |||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 34170 TGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACAT 34115 Query 58302 GAACTGATTGGAGAGCGTCA-----TTACAACACG--AAAAATCCGTTTGATTTTATGAA 58354 | || ||| |||||| ||| | |||| ||||| ||||| | ||| | Sbjct 34114 GCAC---TTG----GCGTCAGCAAGTTATATCACGCTTCTAATCCCTTTGACTGGATGGA 34062 Query 58355 TCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 | |||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 34061 TATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 34007 >seq1476 Length=9414 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || ||| | || Sbjct 9069 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 9010 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || ||| |||||| ||||| | || || |||||| Sbjct 9009 GATACTATCGACAATGTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGACCAG 8950 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || |||||||| || || || ||||| |||||||| || | ||||| ||| Sbjct 8949 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 8890 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 ||||| ||||| || || ||||||||||||||| | || | || ||||| Sbjct 8889 ATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGGTAG 8840 >seq2942 Length=30195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || || ||| | ||| Sbjct 17399 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 17458 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 17459 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 17518 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 17519 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 17554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734171089280