Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1503 260 2e-64 seq3351 219 6e-52 >seq1503 Length=45688 Score = 260 bits (288), Expect = 2e-64 Identities = 439/626 (70%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 34285 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 34344 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 34345 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 34403 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || || || |||||||| || ||||||||||| | | ||| ||| || | |||| Sbjct 34404 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 34463 Query 36329 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 34464 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 34522 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || | | || | ||||||| | |||||| | |||||||||||||| | Sbjct 34523 AATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAA 34582 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 ||||| |||||| || || ||||| || || |||||||||||||| || |||| ||| Sbjct 34583 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGC 34642 Query 36505 CTCGGTAATCTGTACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 |||| ||||| || || | | ||| || | || | ||||||||| || ||||| Sbjct 34643 TTCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCA 34700 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 |||||||||||||| || ||||| || ||||| ||||| | | |||| || | || Sbjct 34701 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA 34760 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 34761 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 34820 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 34821 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 34880 Query 36743 TTTTGATTTTTTGCAAGGATTGGTTC 36768 || |||||| | ||| | ||||| Sbjct 34881 TTCGGATTTTCTCGAAGAAAAGGTTC 34906 >seq3351 Length=46634 Score = 219 bits (242), Expect = 6e-52 Identities = 1030/1625 (63%), Gaps = 22/1625 (1%) Strand=Plus/Minus Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 38938 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 38879 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 38878 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 38819 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 38818 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 38759 Query 65656 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 38758 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATTCTT--T 38701 Query 65716 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 65773 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 38700 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 38641 Query 65774 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 65833 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 38640 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 38581 Query 65834 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 65893 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 38580 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 38521 Query 65894 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTT---GTATC 65949 |||| || | ||| || ||| | | | | | |||| | || || | Sbjct 38520 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTG--ACAGTCTTTCGGGCAA 38465 Query 65950 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009 | |||| ||||| | ||| || || || ||| |||||| | | | Sbjct 38464 TGTTTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 38405 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 38404 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 38345 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 |||| ||||| || ||||||||||| ||| ||||||| | || ||| || |||| Sbjct 38344 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 38285 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| || || || ||| | | ||||| ||||| || || | || | Sbjct 38284 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAA 38225 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 38224 TTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGA 38165 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | | |||||||| ||| ||||| || | ||||| |||||| ||||| || Sbjct 38164 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 38105 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | | |||||||| ||| | || || || || ||| || || || | | Sbjct 38104 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 38045 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | ||| |||| | ||| || || ||||| || ||| |||||| |||| | ||||| Sbjct 38044 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 37985 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 37984 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 37925 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| | |||| || | | | ||||| || | | | | ||| | || | || | Sbjct 37924 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGT 37865 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | || || || || || ||||||| ||| || || || | |||| | || || | Sbjct 37864 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 37805 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 37804 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 37745 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 66729 || ||||| | || ||||| || || | | |||| | || ||| | Sbjct 37744 TATCACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACA 37686 Query 66730 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTGAATAA 66784 | ||| | |||| |||| | ||| ||| | || | || ||||| Sbjct 37685 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 37627 Query 66785 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 66844 | || |||||| || | ||| ||||| | ||| |||| ||| || | || || Sbjct 37626 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 37570 Query 66845 TCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 66904 || ||| || | ||| |||| ||||||||||| | || ||||| |||| || Sbjct 37569 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 37510 Query 66905 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||| ||||||||| || || || || ||| | || || || ||| Sbjct 37509 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 37450 Query 66965 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 67024 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 37449 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 37390 Query 67025 AGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 67084 | |||||||| || || |||| ||| || ||| | ||||| |||||| |||| Sbjct 37389 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 37330 Query 67085 TTTTG 67089 ||||| Sbjct 37329 TTTTG 37325 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 39551 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 39492 Query 64929 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 64986 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 39491 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 39434 Query 64987 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 65046 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 39433 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 39374 Query 65047 TTTTATA 65053 |||| || Sbjct 39373 TTTTGTA 39367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658125214106560