Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3351 300 2e-76 seq1503 268 1e-66 >seq3351 Length=46634 Score = 300 bits (332), Expect = 2e-76 Identities = 1432/2250 (64%), Gaps = 52/2250 (2%) Strand=Plus/Minus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 || || |||||||||||||| || || ||||| ||||| ||||||||||||| Sbjct 39551 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 39492 Query 78808 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 78865 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 39491 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 39434 Query 78866 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 78925 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 39433 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 39374 Query 78926 TTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCAT 78982 |||| || | || | || |||| | | |||| || | ||| || | || Sbjct 39373 TTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGAT 39314 Query 78983 CTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTA- 79041 | | || |||| | ||| |||| || || |||| | || |||| Sbjct 39313 CGCGAAGGATTTGATTCCGAACGTCTGATGTCCACAAATTCATCTCAAT--AAGCTCTTC 39256 Query 79042 -AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATT 79100 | ||||| || || | | ||||||||||| | || | ||| || | || || Sbjct 39255 CATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGTT 39196 Query 79101 ACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGG 79160 || | || || | || || ||| || | ||||||||| ||||| || ||||| Sbjct 39195 GGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTGG 39136 Query 79161 CATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-ATCTGATTTTATCTTTTAGAG 79219 ||| || || | || ||| |||| | |||| | | || | || ||||| | Sbjct 39135 CATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCT-ACTTGCTCTTTCAACT 39077 Query 79220 ATTCCCAATCCCAAAGATCAGA--CGGGACA-ACATTCCAAAGATCATATTGTAGAATAC 79276 | ||||||||| || | || ||||| || | ||| | |||| |||| | |||| Sbjct 39076 GCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATAC 39017 Query 79277 CGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATT 79333 | |||| | |||||| | || | || || ||||| |||| | || |||| Sbjct 39016 CTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGAGTTCCCGT---GCCAATT 38960 Query 79334 CACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 79393 | || || | || || |||| || ||||| ||||| | || ||||| || Sbjct 38959 CCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGC 38900 Query 79394 GTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 79453 | || || ||| ||||||||| | | | || | ||||| || || | ||||||| Sbjct 38899 GAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAA 38840 Query 79454 CACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 79513 | || || || || |||| ||||| || ||| | || ||||| ||||| ||||||| Sbjct 38839 CGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAAT 38780 Query 79514 AATTAATATCTATAATTTTATTGAGATT---CCTGACTATTACTTTGACCACATCCTTTA 79570 |||| | ||| || ||||| |||||||| | | || ||| | ||| || | || Sbjct 38779 AATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATT---TCGTATA 38723 Query 79571 GTTTGAGAAAATCAAATCGTCCATCTATTACAAACATGTT--CAACGCGACAGATGCCAG 79628 ||| ||| | |||| || ||| |||| | || || ||| |||| || |||| Sbjct 38722 ATTTTGCAAATTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAA 38665 Query 79629 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACT 79688 ||| || || || || || || | || | || | || |||||| |||||| || || Sbjct 38664 ATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCT 38605 Query 79689 ACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 79748 | ||||||||| | ||| || ||||| || ||||| || || || ||||| Sbjct 38604 TGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAG 38545 Query 79749 AATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT-CGAG 79807 || |||| || || || ||||||||| || | ||| || ||| | | | | | Sbjct 38544 CATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACA--ATTGCTGG 38487 Query 79808 CCTTTATTATAGACTT---GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGA 79864 |||| | || ||| | | |||| ||||| | | |||||| || | Sbjct 38486 GCTTTG--ACAGTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATCAA 38429 Query 79865 ACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACT 79924 | ||| |||||| || | | || ||| |||| ||||| | || ||| | Sbjct 38428 ATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATT 38369 Query 79925 CTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 79984 || | || | || ||||||||||| ||||| || ||||||||||| ||| | || Sbjct 38368 CTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAAT 38309 Query 79985 CTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 80044 ||| | || ||| || ||||| |||||| || || || ||| | | |||| Sbjct 38308 CTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATAT 38249 Query 80045 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC-GTTTGTTTCCTCCCTGA 80103 | | ||||| || || | || || || | || ||| || | || || || ||| Sbjct 38248 CCGCGTGCCAGGGCTCTAGATAAATTGCAA-AAGACCCTTTCCGCTTCCCACCGCCTTGA 38190 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | ||||| ||| |||| ||| | || | | |||||||| ||| ||||| || | Sbjct 38189 TCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTT 38130 Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 80223 ||||| |||||| ||||| || ||| |||||||| ||| | || || Sbjct 38129 CCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATA 38070 Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || || ||| || || || | || ||| |||| | ||| || || ||||| || || Sbjct 38069 CCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATA 38010 Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||||| |||| | ||||||||| || | |||| | ||| ||||||||| Sbjct 38009 GAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCA 37950 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 || || | || |||| || |||||||| | |||| |||| | | ||||| || Sbjct 37949 TTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 37890 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 | | | | || | || | || || || || || || || ||||||| ||| || || Sbjct 37889 AAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTTGT 37830 Query 80464 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAA 80523 || | |||| | || ||| | ||||| || ||||| |||| ||||||||| Sbjct 37829 GGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAG 37770 Query 80524 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTA 80583 |||||||||| ||| |||||||| || ||||| | || ||||| || || Sbjct 37769 CCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAGAGCTTCTTTG 37710 Query 80584 TATTTGTTAACTACATCCATGGTGATACTTG--AAATAATCGGAGAATG---TTTCCCAT 80638 | | |||| | || ||| || ||| | |||| |||| | ||| Sbjct 37709 TTCTCCATAAC-AATTCGATGCACATCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGG 37652 Query 80639 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 80698 ||| | ||| | || ||||| | || |||||| || | ||| ||||| | Sbjct 37651 TTTCGTGCTTATTTTCGTAAAATAA---TTGAATGTTTTCACTGAAGACTTTGTTTGTAT 37595 Query 80699 CCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTG 80758 || |||| ||| || | || |||| || || || ||| |||| |||||||||| Sbjct 37594 TTTTATGTAAATTGGAAATAGCAATTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTG 37535 Query 80759 TAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCAT 80818 | | || ||||| |||| ||||||| ||||||||| || || || || Sbjct 37534 TGCTGCAGTAAGCTGCGGTTTCTGCTGCCAATTCGTCCAATTCCGATGTGGTGACGCCCG 37475 Query 80819 TATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTA 80878 ||| | || || || ||| || ||||| | ||||| | | || ||||||| Sbjct 37474 GATACACGCCAGCAATCACTTTCTGAGATATTTGGACGGGATCAACGTATTCTGTGTTTA 37415 Query 80879 AGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGT 80938 || || || | |||| | || || | |||||||| || || |||| ||| || Sbjct 37414 AGTTGTAGCAGAGTTTTGTGATTCGCGCAGTGATTTTGTCGAATTTGACGACTTCTTTTC 37355 Query 80939 ATCCATTTCGTTTAATGACAAACATTTTTG 80968 ||| | ||||| |||||| ||||||||| Sbjct 37354 GTCCGTCACGTTTGATGACATACATTTTTG 37325 >seq1503 Length=45688 Score = 268 bits (296), Expect = 1e-66 Identities = 601/892 (67%), Gaps = 23/892 (3%) Strand=Plus/Plus Query 49675 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 49734 ||||| || || ||||| || ||||| || |||||||||| || || || | ||||| Sbjct 34008 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 34067 Query 49735 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 49794 | ||||| ||||| | | | | ||| | || | | || | | || | ||||| | Sbjct 34068 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATCGA 34127 Query 49795 TCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 49854 ||||| ||||| || || ||| ||||| |||||||||| || || | ||| Sbjct 34128 TCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGACT 34187 Query 49855 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 49914 ||||| | | | |||||||||||| ||| || || || | || || | | Sbjct 34188 GGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATGA 34247 Query 49915 ACGGTTTCTTCACTCGGTGGATGCAA---TAAATGTTTAAA---CATCAAACATGCGAAA 49968 | | |||| |||| || || |||| | ||||| |||||| || Sbjct 34248 ATAGAGCCTTC------TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAG 34301 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || || || || || || || | ||| || || || || ||||| ||||| ||||| Sbjct 34302 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 34361 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTC 50087 | || || || || ||||||||||| || ||| ||||| || || || ||||||||||| Sbjct 34362 AATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTC 34420 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC-CACT-TT 50145 || || |||||||| || | ||| ||| || | ||| | || ||| ||| || Sbjct 34421 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATT 34479 Query 50146 TGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | | ||||| | || || || | || || || || ||||| || || | | || Sbjct 34480 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAAT 34539 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | ||||||| | |||||| | || ||||| ||||| | ||||| |||||| | Sbjct 34540 GCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 34599 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | || ||||| || || || ||||||||||| || |||| ||| |||| ||||| || | Sbjct 34600 GTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCT 34659 Query 50324 CTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 | | | || |||| || | ||||||||| || ||||| |||||||||||||| || Sbjct 34660 CACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAA 34717 Query 50382 CGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGAT 50441 ||||| || ||||| ||||| ||| |||| ||| | || ||| ||| ||||| || Sbjct 34718 GGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCAT 34777 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 || | | ||| | |||||| | |||||||| ||||||||| || |||||||| Sbjct 34778 GTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACAT 34837 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 | ||| || ||| | ||| || || || | ||||| | || |||||| Sbjct 34838 GTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTT 34889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718216869165760