Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5374 113 5e-20 seq1476 102 8e-17 >seq5374 Length=4546 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||| || | || |||||||| || ||||||||||| Sbjct 4435 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 4376 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||| ||||| ||||||||||||||||||| ||||| Sbjct 4375 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 4316 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || |||| | || | |||||| | | || ||| Sbjct 4315 ATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACT 4256 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | ||||| || || || ||||| Sbjct 4255 TCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 >seq1476 Length=9414 Score = 102 bits (112), Expect = 8e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || |||||||| || ||||||||||| | || | | ||| |||||| |||||||||| Sbjct 9101 GTTGATTCTTTCTGGATGTTGTAATC-CGCAA-GCGTTCGTCCGTCTTCTAGTTGTTTAC 9158 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | || ||||||||||||||||||| ||||| || ||||| ||||| || || | Sbjct 9159 CGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCT 9218 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||| | | || ||||| | ||| | || || || ||||| | Sbjct 9219 TCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTTTTTCCAGTCAAGG 9278 Query 143166 TTTTTACGAATATTTGCAT 143184 |||| || ||||| ||||| Sbjct 9279 TTTTCACAAATATCTGCAT 9297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||||| ||||| || ||||||||||| Sbjct 8843 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 8902 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||||||||| ||| | || ||||||||||| || ||||| Sbjct 8903 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGA 8962 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | || | || || | | ||| ||| Sbjct 8963 ATCCCTTCTTTGTCCTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACT 9022 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || |||| || || || || |||||||| Sbjct 9023 TCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 9069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506977742858880