Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5374 120 2e-22 seq1476 111 1e-19 seq2942 100 2e-16 >seq5374 Length=4546 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| || | || || ||||| || ||||||||||| ||| | | |||||||| Sbjct 4417 ACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCT 4358 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | |||| |||||| || || ||||||||||||||||| | Sbjct 4357 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGA 4298 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | || || || || | || || || || || ||||| || Sbjct 4297 ATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTT 4238 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| ||||| Sbjct 4237 CCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 >seq1476 Length=9414 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || ||||| || ||||||||||| || | | ||||||| | ||| Sbjct 8866 ATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTCTTCCAGTTG 8925 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || || | || | |||||| ||||| ||||| ||||||||||| ||||| Sbjct 8926 TTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTGGATTTT 8985 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || ||||| | ||| || || || ||||| ||||| || || Sbjct 8986 CGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTTTCCCAGT 9045 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || |||||||||||||| Sbjct 9046 CAGCGTCTTAACAAAAATTTGCAT 9069 >seq2942 Length=30195 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| ||||||||||| || ||| |||| || |||||||| || ||| | | Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 ||||||| ||||||||| ||||||||||| ||||| ||| || ||| ||| | | Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | || || ||| ||| || || | || || ||||| || || || || || || | Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 15354 AAATTTGCAT 15363 |||| ||||| Sbjct 17408 AAATCTGCAT 17399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362153669082744