Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1503 208 7e-49 >seq1503 Length=45688 Score = 208 bits (230), Expect = 7e-49 Identities = 562/843 (67%), Gaps = 24/843 (3%) Strand=Plus/Plus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||| | ||| | ||| |||||||||||||||||||||| | ||||| | ||||| Sbjct 34007 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 34066 Query 12925 AAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTA-GTAACAA 12981 | || || ||||| ||| | ||| || | || | || | | ||||||| Sbjct 34067 CCAGTCAAAGGGATTA---GAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAA 34123 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 || || || |||||||| ||||| || ||| ||| | |||||||| |||| | Sbjct 34124 TCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTC 34183 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || || | | ||| || ||| | || ||| || ||| || ||| || || | Sbjct 34184 GACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGC 34243 Query 13102 TCTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | || | | || |||| | |||| || | | |||||| ||||||||| Sbjct 34244 A-TGAATA-GAGC-CTTCTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 34300 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| || | ||||||||| | ||| || ||||| |||||||| || || ||||| Sbjct 34301 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 34360 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTCCTT 13277 | |||||||| || | ||||||||||| |||| || || || || ||||| ||||||| Sbjct 34361 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 34419 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC-CAC 13336 | || || ||||| |||| || ||||| || ||| | |||| | ||| ||| Sbjct 34420 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACG----AGGCATACTTTGGATCGCAC 34475 Query 13337 --TTTC-TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 |||| ||||| | |||||| | ||||||| || |||| || ||| | | Sbjct 34476 CATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGT 34535 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| | |||||| | ||| || || ||||| |||||||| ||||| ||| Sbjct 34536 AAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCC 34595 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || |||||||| || || ||||| || || ||||| |||| ||| || | | |||| Sbjct 34596 GAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGA 34655 Query 13514 ACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || | | |||| | || | ||||| || || || || ||||| || ||||| Sbjct 34656 ACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAA 34714 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 || || | | ||| || ||||| | | |||| || || || | || | ||| || Sbjct 34715 GAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATT 34774 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || | ||||| | || || |||||||||| || | || |||||||| Sbjct 34775 CATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATA 34834 Query 13693 CAT 13695 ||| Sbjct 34835 CAT 34837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430952018973168