Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5374 127 2e-24 seq1476 125 6e-24 >seq5374 Length=4546 Score = 127 bits (140), Expect = 2e-24 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | ||| |||||||| || ||||| || || | Sbjct 4448 AAAAATTTGCATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGAT 4389 Query 94828 GTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | ||| || | || || || |||||||| | ||||| | | | Sbjct 4388 GTTGTAATCCGCAAGAGTACGTCCG--TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGT 4331 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||||||||| | ||| || ||||| || ||| ||| Sbjct 4330 TGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTG 4271 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||| ||||||||||| ||||||||||| |||||| Sbjct 4270 TCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGC 4211 Query 95006 ATG 95008 ||| Sbjct 4210 ATG 4208 >seq1476 Length=9414 Score = 125 bits (138), Expect = 6e-24 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | |||||||||||| || ||||| || || | Sbjct 9058 AAAAATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGAT 9117 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || ||| | || || || ||||| ||| | ||||| | | | Sbjct 9118 GTTGTAATC-CGCA-AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGT 9175 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||| ||||| | || || ||||| ||| | | | |||| Sbjct 9176 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTG 9235 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| || | || || ||||||||||| | ||||||||||| |||||| Sbjct 9236 TCTGATGACTCGACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGC 9295 Query 95006 AT 95007 || Sbjct 9296 AT 9297 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||| ||||| ||| |||| |||| | |||||| ||||||||||| ||||||||| Sbjct 8915 TCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTG 8974 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| || | ||| ||| || | || || || | ||| || Sbjct 8975 TCCTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATA 9034 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || || ||||| || ||||| Sbjct 9035 GTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 9069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258788546240