Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq83 158 2e-34 seq1726 132 8e-27 >seq83 Length=162669 Score = 158 bits (174), Expect = 2e-34 Identities = 201/276 (73%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | |||||| || |||||||||||||||||||| ||||| || Sbjct 58969 GCAAAGCGTCATCGTAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAACCAGCCATT 58910 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || ||||| ||| || || | |||| ||||| | Sbjct 58909 CGTCGTCTTGCTCGTCGTGGAGGTGTCAAACGTATCAGCGGTCTTATCTACGAAGAAACA 58850 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | ||| | | | ||||| | ||| | | || || ||| Sbjct 58849 CGAGGTGTTCTCAAAGTGTTCTTGGAAAATGTTATTCGCGATTCCGTAACTTACACAGAG 58790 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | |||||| | ||||| ||| | ||||||||||| Sbjct 58789 CACGCTCGTAGAAAGACTGTAACAGCAATGGATGTGGTCTACGCACTTAAACGTCAAGGA 58730 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA---ATCTTCT 16705 |||| |||||||||| || |||| ||||||| Sbjct 58729 CGTACACTTTATGGTTTCGGTGGTTAGATATCTTCT 58694 >seq1726 Length=68578 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | || || |||||||||||||| ||||| ||||| ||||| Sbjct 13083 CGCCAAACGTCATCGTAAAGTACTGCGCGATAACATCCAAGGTATCACAAAGCCCGCTAT 13142 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || || ||||| || || || |||| ||||| | Sbjct 13143 CCGTCGTCTTGCTCGTCGTGGAGGTGTAAAGCGAATCAGCGGTCTGATCTACGAAGAAAC 13202 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| | | || |||| ||| | | || ||||| Sbjct 13203 ACGTGGAGTTCTCAAAGTATTCCTTGAAAATGTCATCCGTGACTCAGTAACATACACCGA 13262 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || | || || || || | |||||| |||| ||||| ||||||||||||| Sbjct 13263 GCATGCGCGCAGAAAAACAGTGACAGCAATGGATGTCGTATATGCTCTGAAACGTCAAGG 13322 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 | | | | || |||||||| Sbjct 13323 CAGAACCCTCTACGGTTTTGG 13343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069911648312