Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1503 163 3e-35 >seq1503 Length=45688 Score = 163 bits (180), Expect = 3e-35 Identities = 402/605 (66%), Gaps = 14/605 (2%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||||| ||||||||| |||||||| | |||||||| | ||| || | ||||| |||| Sbjct 34285 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 34344 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | | || ||||| ||||||| || || | ||||||||| || ||| |||| ||| Sbjct 34345 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 34403 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTC 21645 || || || || || || ||||| ||||| || || | || ||| | | | | || | Sbjct 34404 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 34463 Query 21646 TTT--ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 ||| ||| | |||||| ||||||| ||| || | ||| || ||||| Sbjct 34464 TTTGGATCGCA---CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTT 34520 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 ||||| || | | ||| | ||||||| | ||| | ||| Sbjct 34521 TCAATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAAT 34580 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 ||||| ||| || |||||||||||||| || || |||||||||||||| |||| Sbjct 34581 AACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGA 34640 Query 21824 GCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 || || | |||||||| | |||| || || | |||||||| || ||||| Sbjct 34641 GCTTCGGGGATCTGAACCTCACTGCTGAAATTCATG-GCGAGATTTTCATTGACAATTCC 34699 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 ||||||||| ||||| || ||||| | | ||| ||||| | || ||| || || | || Sbjct 34700 ATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATAT 34759 Query 21943 TTTTTTCCAATCTAATAAATCTTTTG--ATAAATCTACTTCTTCAGTTGTCCAAAAGCTA 22000 || ||| || || || | || ||||| | |||||| | ||||||||||| Sbjct 34760 ATTAAGCCAGTC--ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTT 34817 Query 22001 GCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAAC 22060 || || || |||||||| ||| || ||| | | ||| ||||||| ||||| Sbjct 34818 GCCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAG 34877 Query 22061 CTGTT 22065 | ||| Sbjct 34878 CGGTT 34882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531862343572160