Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1476 145 7e-30 seq5374 120 3e-22 seq2942 102 7e-17 seq527 89.7 4e-13 >seq1476 Length=9414 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| |||| || ||| | || || | |||||||| || || Sbjct 9070 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 9011 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| ||||| |||||| ||||||||||||||||| || ||||| Sbjct 9010 AGATACTATCGACAATGTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGACCA 8951 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||||||||| |||||| | ||||| | ||||| | | |||||||| Sbjct 8950 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAA 8891 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || ||||| ||| | || || Sbjct 8890 CATTCAGAAAGAGTCTACGCTTCATCTGGTACT 8858 >seq5374 Length=4546 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| || || | || || || ||||||| | ||||| ||||| Sbjct 4206 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 4265 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| ||||| | ||| | || | ||| ||||||||||| ||||| ||||| Sbjct 4266 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAA-GACAAAGAAGGAATTCCTCCTGA 4324 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || || || || |||||| ||||||| | || ||| | | ||||| Sbjct 4325 TCAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTA 4384 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || |||||||| ||| | || ||||||||| | || | || |||| Sbjct 4385 CAACATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGAA 4437 >seq2942 Length=30195 Score = 102 bits (112), Expect = 7e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || ||||| | ||||| ||| | ||||| | || || || || Sbjct 17395 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 17454 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| ||||| ||||| | || | ||| ||||| ||||| ||||| || | Sbjct 17455 ATCCGACACGATCGATAATGTGAAGGCGAAGATTCAA-GACAAGGAAGGAATTCCTCCCG 17513 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||||||||| | ||||| || || |||||||| || || | || || | | |||| Sbjct 17514 ACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATT 17573 Query 25174 ACAATATTCAAAAAG 25188 |||| || ||||||| Sbjct 17574 ACAACATCCAAAAAG 17588 >seq527 Length=46368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || ||||||||||| | |||||||| || |||||||| ||||||| ||| Sbjct 8259 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 8318 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | |||||||| || || |||||| |||| ||||| | || ||| Sbjct 8319 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTA 8370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297453625960