Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1503 242 4e-59 >seq1503 Length=45688 Score = 242 bits (268), Expect = 4e-59 Identities = 646/966 (67%), Gaps = 31/966 (3%) Strand=Plus/Plus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCAT-AACACCA 92799 |||||||||||||||||| || || || | || || | | || ||||||| Sbjct 33943 ATTAGAAATCTGCATCTAAAGTGAAAACTTGCTCCTTTGCAG----AGACACCAACACCA 33998 Query 92800 CATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATC 92859 |||| ||||| ||||| ||| ||||| || ||||| ||||||| || ||| ||| Sbjct 33999 GATTTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATC 34058 Query 92860 GAATTCA-CTAGTGATTGG-ATTCTTGGCGTTATAATACTTTTCACCGATCAACT-CGTA 92916 || || | ||| | || ||| |||| ||| |||| || ||| | | | Sbjct 34059 ATATCCATCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGC-CAAGTGCATG 34117 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || |||| ||| || ||||| || ||||| ||| ||||||| |||||||||| | Sbjct 34118 TAACAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAAT 34177 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 || || || || | || | || |||| ||||| | |||||| || | Sbjct 34178 TAGCTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAAT 34237 Query 93037 GATTTCTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||| | || | | | || ||| | || | ||| | | |||||| | || | Sbjct 34238 GATTGC-ATGAATAGAGCCTTCTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATG 34296 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA--CC 93153 ||||||| ||||| ||||| || || || | |||||| |||| ||| || Sbjct 34297 CAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATT--TGAAAAGCAAAGTCC 34354 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaaTA 93212 || | || |||||||||||| ||||||||||| || ||| || | || || ||||| | Sbjct 34355 AGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGA 34413 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 | ||||| ||||| ||||| || || | | ||| ||||| | || || ||| || Sbjct 34414 TTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAAC---GAGGCAT-ACTTTGGA 34469 Query 93273 TC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 || ||||| || ||||| | ||||| || ||| || || | |||||| || ||| Sbjct 34470 TCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG 34529 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 | || | | | || | |||| ||||||||||| || || | |||||| Sbjct 34530 CACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATAC 34589 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 | ||| || || | ||| || ||||||||||| |||||||| || |||| |||||| | | Sbjct 34590 ACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGG 34649 Query 93449 ATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||||| || || || |||| || |||||||||||||||| || ||||| || Sbjct 34650 ATCTGAACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTGACAATTCCATCACTGGC 34708 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 |||||| || ||||| | || || ||||| ||| | |||| || | ||| ||| Sbjct 34709 TGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCA 34768 Query 93568 ATCGGATAGATCTTTTGAA--AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || || || | || | | ||||| |||||| | |||||||| ||| |||||| Sbjct 34769 GTC--ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCT 34826 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 || || ||||| ||||| || || | ||| || ||||||| |||||| || || || Sbjct 34827 TTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGA 34886 Query 93686 TTATCT 93691 || ||| Sbjct 34887 TTTTCT 34892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820538964160