Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2942 118 9e-22 seq1476 113 4e-20 seq5374 98.7 8e-16 seq3351 96.9 3e-15 >seq2942 Length=30195 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| ||||| |||||||||| || ||| | || Sbjct 17399 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 17458 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || |||||||||||||| || ||||| ||||| ||| Sbjct 17459 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 17518 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| ||| || || | ||||||||| Sbjct 17519 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAAC 17578 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 17579 ATCCAAAAAG 17588 >seq1476 Length=9414 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | || | ||||||||| | | Sbjct 9069 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 9010 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || ||||| || ||||| || || ||||| || || || Sbjct 9009 GATACTATCGACAATGTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGACCAG 8950 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| | || || ||||| | | ||||||||| Sbjct 8949 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 8890 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 8889 ATTCAGAAAGAGTCTAC 8873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| | ||| | ||||| || | | Sbjct 9297 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATCA 9238 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || ||||| || ||||| Sbjct 9237 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 9178 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| |||| || || || | | ||||||||| Sbjct 9177 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 9118 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 9117 ATCCAGAAAGAATCAAC 9101 >seq5374 Length=4546 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || || ||||| | ||||| || | | Sbjct 4209 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4268 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||||||||| || || ||||| || ||||| Sbjct 4269 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4328 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| |||| || || || | | ||||||||| Sbjct 4329 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 4388 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||| || | || ||||| Sbjct 4389 ATCCAGAAAGAATCAACGTTGCACTTAGT 4417 >seq3351 Length=46634 Score = 96.9 bits (106), Expect = 3e-15 Identities = 1101/1762 (62%), Gaps = 98/1762 (6%) Strand=Plus/Minus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||| | ||||||||| ||| ||| | | || |||||||||||||| | ||| Sbjct 39459 AATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAAT 39400 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | |||| | || |||||||| || |||||||| ||| |||| || || || Sbjct 39399 CGCCTTTTGC---TTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGAGGCGGAAT 39343 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 ||| | || || || ||| ||| | | || | |||| ||| | | || | | Sbjct 39342 TTCAGCGATATTTTGTACGGAACCGC-GATCGCGAAGGATTTGATTCCGAAC-GTCTGAT 39285 Query 129087 GT--ACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||||| | || | || || | | |||||||| | | | ||| || Sbjct 39284 GTCCACAAATTCATCTCAATAAGCTCTTCCATGAGATATTTGTTGACAATTGTAAATTCT 39225 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||||| ||| | | |||||| ||||||||||| | || || ||| Sbjct 39224 CCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAGACTCGCAATTG 39165 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGTTTCGCA 129262 || | ||||||||||||| ||||| ||||| ||| | ||||| |||||||| | Sbjct 39164 CCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAA--GAGTTTCGGA 39107 Query 129263 AACCGTG-CTGTTTAATGTCtttttttAATTGTGTCCAGTCCCA-CATC--GATGTGGGT 129318 ||||| | || | | | ||| || || |||| ||||| | | || ||| Sbjct 39106 TTCCGTGAGTAGCTACT-TGCTCTTTCAACTGCTTCCAATCCCATCGACCGGAATCGGGA 39048 Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACTGGCGGGACTGGAAAAGTA 129374 || | ||||| || |||| || ||||| | |||||| | | | | || Sbjct 39047 ATGACCTGCCACATATCAAATTGAAAGATACCTCGACTAACTGGTGATCCAGCA----TA 38992 Query 129375 GGAATCGTGCACGCCGTAAGCTTTTGCCAATTC---GCAACTCGCTTCCAATGCGCCAAA 129431 | |||| | ||| | ||||||||| | || ||||||| || | || Sbjct 38991 GCTCTCGTACGGTCCGAGTTCCCGTGCCAATTCCATGGAA---GCTTCCATCGCCGCGAA 38935 Query 129432 ATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCAT 129491 ||| || ||||| ||||| |||| | | | || | |||||| | || | Sbjct 38934 ATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATGGAAG 38875 Query 129492 ACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 || || || ||| || ||||| | |||||||| || | || || ||||||||| Sbjct 38874 ACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCG 38815 Query 129552 TCTATTGGATTTTTGTGCCGACAACAA-GGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 |||| ||||| | || || ||||| || |||| || || |||||||| | Sbjct 38814 CTGATTGCTCACTTGTG-CTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGA 38756 Query 129611 AATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT 129670 ||| || || ||||| || | | | ||| ||| |||||| | | | | | Sbjct 38755 GATTTTTCGTAACGATTTTTGTGATTTCGTATAA-TTTTGCAAATTGAAAT-TCTTTC-- 38700 Query 129671 CGATGTCGACAAATTGATTGACA--CAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 || | ||||||| |||||| || || ||||||||||| || || ||| || Sbjct 38699 TGA--TACACAAATT--TTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTT 38644 Query 129729 TTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 ||| |||||||| ||||| ||| | ||| || | |||||| || | || Sbjct 38643 GGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATT 38584 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||||| ||| || ||||| |||||||| | ||| |||||||| || || || Sbjct 38583 CTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTC 38524 Query 129849 GACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGA---TCTGTCTTACAAA 129905 | || | || | ||||| |||| | | || |||| ||| || ||| Sbjct 38523 AATCTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAAT 38464 Query 129906 TTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATT--CTGAGCCGTGT---ACG 129960 || | | |||||| |||| | ||||||| || || ||| | Sbjct 38463 GTTTTGAGA---CTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATA 38407 Query 129961 GTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACT 130020 |||| | | | || | |||||| | |||||||| | | |||| || Sbjct 38406 AAGTCGTGGAGCCTCGTT-----CGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACA 38352 Query 130021 CGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCC 130080 ||||||||||||| |||||| | ||| || || || ||||||||||| || || || Sbjct 38351 CGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGC---TCGATGG 38295 Query 130081 TCGGCA--CCCATG----TTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 || ||||| |||||| ||||| || || || | || || |||||||| Sbjct 38294 AGTTCATTTCCATGATTCTTACGT---AGTTCCAGAAACTCAAAGATATCCGCGTGCCAG 38238 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGC 130191 || || | ||||||||| | | || ||||| || || ||||| ||||||| || Sbjct 38237 GGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGA 38178 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | | | ||| | || || | ||||| | | ||| || | | || || || | Sbjct 38177 GCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCG 38118 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 ||| ||||| | |||| || || || | || || ||||| | | Sbjct 38117 CGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCAC 38058 Query 130312 TTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTA 130371 ||||| || |||| || | ||||| || |||||||| ||||| || |||| Sbjct 38057 TTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGC 37998 Query 130372 ATGTTTAGGAGGAAACACGAGGCCAATTGGGCGTAACATGAT-CCGCTGGCAAACAAAGT 130430 ||| || || |||||||| | ||||||| | | | |||| ||| | || Sbjct 37997 ATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAA-AGCGT 37939 Query 130431 TGGACTTGCATGTGTATACATTTTGTGTGCCATCAAATTGTACGTTTCAAAAACGTTTTC 130490 ||| ||||||| ||| | | || |||| ||| | |||||||| |||||| || Sbjct 37938 CGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTC 37879 Query 130491 AATGCAATCGTCGGTGTCGTTGCCGTGTATGGTTAGAGCCACACGCATGTACATATGTTG 130550 | ||| | || || ||||||| | |||||| ||||| ||||||||| Sbjct 37878 CA---AAT------TCTCTTT---GTGTATGCCGACAGCCACTCGCATTATCATATGTTG 37831 Query 130551 AATGCGCTCCGCCAC-TTTCCCCTCAATCGTTTTCA--AGTAACCATTT-TCGAGAGTTT 130606 ||| || ||| ||||| ||| || || || || |||| || ||||||| Sbjct 37830 TGGGCGTTCACACACTTTTCCATTCACACG----CAACAGATACGATTTCTCCAGAGTTT 37775 Query 130607 TAAATCCAAAATATTTGTAATC 130628 |||| |||||||| | |||||| Sbjct 37774 TAAAGCCAAAATAGTCGTAATC 37753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698412323960