Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3378 96.9 7e-15 seq3539 86.0 1e-11 seq476 84.2 4e-11 >seq3378 Length=124254 Score = 96.9 bits (106), Expect = 7e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 142497 TGAGA--TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||||| ||||| | ||||||||| |||||||||| ||||||||||||| ||||||||| Sbjct 81 TGAGAAGTAGCCTGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTG 140 Query 142555 GGTTCGAGCCCCACATCGGGCA 142576 |||||||||||||| ||||| Sbjct 141 GGTTCGAGCCCCACGGTGGGCA 162 >seq3539 Length=84347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| ||| | ||||| ||||| | || |||||||| | |||||| || ||| | Sbjct 21601 GGATCTATGTAATTGTGAGTTCTCTTTGGCGTATGGTGGTATGATTCTACTGAACAACGC 21542 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| | | ||| | || | || ||||||||| ||||| |||||| ||||| Sbjct 21541 CCGGTTGCGTTTGAAGAGAGGACATCGTTATGGTCTCTGTGGTCCAAATGGATGCGGTAA 21482 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTC---CTAACGCATC 279526 || || ||| | ||||| || ||||| || ||||||||||||| |||| | Sbjct 21481 ATCAACGCTGATGAGAGCCATCGCTAACGGCCAACTGGAAGGATTTCCGTCTAA---AGA 21425 Query 279527 TGAGGTAAGGACAGTGTATGTAGAGCA 279553 |||| ||| ||| |||| ||| || || Sbjct 21424 TGAGCTAAAGACTGTGTTTGTCGAACA 21398 >seq476 Length=77562 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 ||||||||||||||||||||| | || |||| | |||||||||||||||||||||||| Sbjct 89 TAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCCCCACGG 148 Query 142571 CGGGCA 142576 ||||| Sbjct 149 AGGGCA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027760629584344