Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1476 172 1e-37 seq5374 161 2e-34 seq2942 159 6e-34 seq174 136 7e-27 seq234 105 1e-17 seq527 95.1 2e-14 seq1891 91.5 3e-13 seq3378 87.8 3e-12 >seq1476 Length=9414 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | |||||||| | ||| || ||||| |||||||| ||||| | Sbjct 9069 TTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCG 9128 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||||| || || |||||||| || || | ||| || || || | Sbjct 9129 CAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAG 9188 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||| ||||| ||| || || ||||||| ||| || | Sbjct 9189 GAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGA 9248 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||| || || |||||||| || | ||| || || |||||||||||| Sbjct 9249 CTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 9298 >seq5374 Length=4546 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | || ||||| | ||| || ||||| |||||||| ||||| | Sbjct 4437 TTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCG 4378 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||||| || || || ||||| || || | ||| || || || | Sbjct 4377 CAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAG 4318 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| |||||||||||||| ||||| || ||||| ||||||| || || | Sbjct 4317 GAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAA 4258 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| |||||||| ||||| || || || || || || |||||||| Sbjct 4257 CTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| ||||||||||| || ||||| ||||| ||| || || ||||| | ||| || Sbjct 4546 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCG 4487 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || |||||||| || || || ||||| || || || |||||| Sbjct 4486 ACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 4436 >seq2942 Length=30195 Score = 159 bits (176), Expect = 6e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||||||||| ||||| | ||| || | || || || || || || || ||||| | Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||||||||||| ||||| |||||||||||||||||||| ||||| || | Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| ||||| | |||||| || || | ||||| ||||| || ||||| |||||||||| Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 68452 ATATCTGCATT 68462 | ||||||||| Sbjct 17408 AAATCTGCATT 17398 >seq174 Length=119447 Score = 136 bits (150), Expect = 7e-27 Identities = 256/371 (69%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 268223 ACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGC 268282 ||||| || | || ||| | ||| | |||| ||||||| |||||||||||| | Sbjct 47277 ACAAAATCTTGAGGATCATTATGCTGCATCATTCTCCACATACATTCGACATAGTCTCTT 47218 Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 ||||| ||||| || || || || |||| || || || | ||||| | || | || Sbjct 47217 GCATGACCCCAGTCTCGTTTAGCATCCAAATTTCCAAGATAGAGGCAATCTTGATACCCT 47158 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | |||| ||| |||| || || || || ||||||||||| || || | Sbjct 47157 TCATTGATGCGTACAACCGCGCGGGTAATCTTGCGAGTCACGAACGTTAGCCCCCGGCGT 47098 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461 || |||||||| || || | ||| || || ||| || || || |||||| || | ||| Sbjct 47097 GGACTCTCGTGATTAAATAAGATTCCATT-CACTGCAAATATTTTATATGCTTCTCTGTA 47039 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521 || ||||||| ||| |||||||| ||||||||| |||||||||| || || | || Sbjct 47038 ATTAACGACCGACCAATATGCAAATTGCTTTGCAACACCGTACGGAGATCGCGGGTAAAA 46979 Query 268522 GGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATG 268580 |||| || || || || || ||||||| | || || ||||||| || || | Sbjct 46978 AACCGTC-TGTTCATTCTGTGGCGTTTCTCGAGCGTTCCCGTAGAGCTCACTCGTGGAAG 46920 Query 268581 CTTGGTAGAAC 268591 |||| || ||| Sbjct 46919 CTTGATAAAAC 46909 >seq234 Length=209331 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | || || ||||| || || || | ||||||||| || ||||| |||||| Sbjct 198634 CCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCC 198575 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||| |||||||||||||| | || Sbjct 198574 TTGTCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTA 198515 Query 68424 ATGGTTTTTCC 68434 || |||||||| Sbjct 198514 ATTGTTTTTCC 198504 >seq527 Length=46368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||||||||| || ||||| || || || || || || Sbjct 8208 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 8149 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||| | |||||||| || |||||||| Sbjct 8148 TCCAATGTGATTGTCTTCCCCGTTAAAGTCTTGACAAAAATCTGCAT 8102 >seq1891 Length=72635 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 176268 TCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTA 176327 || || || || |||||||||| |||||||| || |||| |||| |||||||||| Sbjct 64942 TCTTTTCCACCTTGAAGGCGGGTTCCGAATTGACCTGAAGGATACAGCATATTGATGTTA 65001 Query 176328 TTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCG 176387 || ||||| || ||||| || ||||| || || | || || || ||||| || Sbjct 65002 TTGGAACCAACATAGTCCTGCGCCATGTTAACAATAGTAGAGTGCAGCGATGCCTCACCA 65061 Query 176388 TGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGT 176447 || ||||| | | | |||||| |||||||| | ||| || ||||| ||||| ||| Sbjct 65062 TGATGATACGCTGTATGCTCACTACAATATCCGGCCAGCTGTGCTACTTTCATTTCCTGT 65121 >seq3378 Length=124254 Score = 87.8 bits (96), Expect = 3e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACAT 84522 ||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 97 TAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACGG 156 Query 84523 CGGGCA 84528 ||||| Sbjct 157 TGGGCA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921555766700480