Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5374 134 1e-26 seq1476 113 4e-20 seq527 102 7e-17 seq2942 100 2e-16 >seq5374 Length=4546 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||||| || | ||| |||||||| || ||||||||||| Sbjct 4438 ATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 4379 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||| |||||||| |||||| |||| ||||| || || || ||| Sbjct 4378 GCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 4319 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| |||| | || | ||||| | || || Sbjct 4318 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCA 4259 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||| || | || || || || || ||||| |||||||||||||||| Sbjct 4258 ACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCATGG 4207 >seq1476 Length=9414 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | ||| |||||||| || ||||||||||| Sbjct 9068 ATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 9127 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| ||||||||||| ||| |||| ||||| || || || ||| Sbjct 9128 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGA 9187 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | |||| ||||| | || ||| Sbjct 9188 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCG 9247 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||||| ||||| |||||||| Sbjct 9248 ACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 9297 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| || | | || | ||| | |||||| ||||| |||||||||||||| Sbjct 8841 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 8900 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || ||||| ||||||||||| || | || ||||| || ||||| |||| Sbjct 8901 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 8960 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||||||||| || || || | | || | || || | ||||| | Sbjct 8961 GAATCCCTTCTTTGTCCTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 9020 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | ||||| || ||||| || || |||||||| ||||| Sbjct 9021 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 9069 >seq527 Length=46368 Score = 102 bits (112), Expect = 7e-17 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| ||||||| || | ||| | ||||| ||| |||||| || ||||||||||| || Sbjct 8385 ACCACCACGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGGATGTTGTAATCCGC 8326 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || ||| |||||| | |||||| ||||| | |||||||||||||||||||| | Sbjct 8325 TAAT-GTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGG 8267 Query 114274 GAATGCCT 114281 |||| ||| Sbjct 8266 GAATACCT 8259 >seq2942 Length=30195 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 ||||||| ||||||||||| | || || || || | |||||| || ||| | | Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | |||||||||||| |||||||| ||||| ||||| |||||| || | | | Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||||||| |||||||| || | || | ||||| ||||| || || || || | Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 114373 AAATCTGCATGGCTTAATTA 114392 |||||||||| ||||| || Sbjct 17408 AAATCTGCAT-TCTTAAGTA 17390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420104783675808