Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2942 156 1e-32 seq1476 156 1e-32 seq5374 127 5e-24 >seq2942 Length=30195 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||||||||| || || || |||||||| || ||||| || ||||||||||||||||| | Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||||||| || |||||||| || || || || ||||| ||||| || | Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| ||||| || || || ||||| || |||||||| || |||||||||| Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 288464 ATATCTGCATT 288474 | ||||||||| Sbjct 17408 AAATCTGCATT 17398 >seq1476 Length=9414 Score = 156 bits (172), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| ||||||| ||| ||||| || || || || || || Sbjct 8843 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 8902 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 ||||||||||||||||| | |||||| || || || || ||||| || || ||| Sbjct 8903 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTG---GTCTGGA 8959 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| |||||||||||||| ||||| || || |||| ||| ||||| Sbjct 8960 GGAATCCCTTCTTTGTCCTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCC 9019 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||| || || ||||| ||||| ||||| || || || |||||| Sbjct 9020 ACTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 9070 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | || | ||| |||||| ||||| || || || || Sbjct 9070 TCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGC 9129 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||| ||||||||||||| |||||| || |||||||||||||| || ||| | || Sbjct 9130 AAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGG 9189 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || |||||||| ||||| |||||||| || |||| || || || || Sbjct 9190 AATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGAC 9249 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | || || || || || |||| || || || |||||||||||| Sbjct 9250 TTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 9298 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || | || | ||| |||||| || || || || || || Sbjct 9298 TCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCGC 9357 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||| ||||||||||||| ||||||||| |||||||||||||| || ||| Sbjct 9358 AAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGA 9409 >seq5374 Length=4546 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | || | ||| |||||| ||||| || || || || Sbjct 4436 TCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGC 4377 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||||||||||| ||||||||| |||||||||||||| || ||| | || Sbjct 4376 AAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGG 4317 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||||| || || || || || || || || || || | || || || || Sbjct 4316 AATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAAC 4257 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||| ||||| || || || || || || || |||||||| Sbjct 4256 TTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179566978761552