Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3539 116 8e-21 seq1374 104 5e-17 >seq3539 Length=84347 Score = 116 bits (128), Expect = 8e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 334178 AGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGC 334237 ||| || || ||||| || || ||||| | || || | |||||| ||||||||||| Sbjct 21430 AGACGGAAATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACCGCA 21489 Query 334238 CCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTT 334297 || ||||| ||||| ||||| || || | ||| | ||||| | ||||| | ||||| Sbjct 21490 TCCATTTGGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTT 21549 Query 334298 CAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||| ||||| | |||||||| |||| ||| || ||||||| ||| |||||| Sbjct 21550 CAGTAGAATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 21601 >seq1374 Length=19501 Score = 104 bits (114), Expect = 5e-17 Identities = 260/386 (67%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 297254 GGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAA-CCATTCAC 297312 ||||| ||| | || ||| | ||||||| || || |||||||| ||| |||||||| Sbjct 1858 GGATTATAATTTGGAATAGAACTCGACCAGCCTGTTCCGATTCC-CTCACTTCCATTCAC 1800 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 ||| | ||||||| || || ||||| | ||||||||||| | ||||| |||| Sbjct 1799 CAGCACCATCGGAATCACCGGTACATACCATTCTGGTTCGATAAGTTGCCCGTCTTCATC 1740 Query 297373 CAGATATTTCAG-AAG--ATTATCGTCCGTATCGACGAAAACCTGT-CG-AGTCTGAGGG 297427 || | ||||| ||| || ||| | | ||||| || | ||| || | || | Sbjct 1739 AAGGAAATTCAGTAAGGAATCATCATTTGGATCGAAGAT--CTTGTACGCAATC---GAC 1685 Query 297428 TTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAA 297487 | || ||| |||||||| || || | || || ||| || ||||| | | | | | Sbjct 1684 TCCAATTTGGTGAAAATGTAACGAGGGCTAGCAGCATCTTTCCCACCAAGTATCCGAGTA 1625 Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 ||||| || || | || |||| || | ||||| |||||| | | || || || Sbjct 1624 CCGAATTGTCCATTTGGAGACAATAGATTCGTATTATTACTTCCGGTAAAGTCTTGAGCC 1565 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 297607 | || | ||| || || |||||| |||||| ||||||||||| | |||||||| Sbjct 1564 ATATTAATGATCGTTCCATGCAGACTTGCTTCTCCATGGTGATAAGACGAATGCTCTGAT 1505 Query 297608 ACGTAACCGCTGAACTGTGCAACCTT 297633 || |||||| || ||||| || || Sbjct 1504 ACATAACCGGCGAGTTGTGCCACTTT 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102798268320400