Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1476 138 1e-27 seq5374 116 4e-21 seq2942 93.3 4e-14 >seq1476 Length=9414 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| ||| || ||||| |||||||||||||| || | ||||| |||| Sbjct 8857 AAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTC 8916 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || |||||| |||| || || |||||||| |||||||| |||||||| || Sbjct 8917 TTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTGTC 8976 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| ||| || | ||||| | |||||||| | || | || Sbjct 8977 CTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGT 9036 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| || || || |||||||||||| Sbjct 9037 TTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 9070 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | ||| |||||||| || ||||||||||| || | || || ||||| Sbjct 9086 AGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCT 9145 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || ||||| | || || || ||||| || |||||||||||||| || || Sbjct 9146 TCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCC 9205 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | || ||||| | ||||| || Sbjct 9206 TGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTT 9265 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || ||||| ||||| || || || |||||| Sbjct 9266 TTTCCAGTCAAGGTTTTCACAAATATCTGCATT 9298 >seq5374 Length=4546 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | ||| |||||||| || ||||||||||| || | || || ||||| Sbjct 4420 AGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCT 4361 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || || | || || || ||||| || ||||||||||||||||| ||| Sbjct 4360 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 4301 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| || | || || | || ||||| | ||| | |||| Sbjct 4300 TGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTC 4241 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || ||||| ||||| Sbjct 4240 TTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 >seq2942 Length=30195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||||||| |||| || || |||| || | || || || || ||| Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | ||||| |||||||||||||||||||| || ||||| || || ||| ||| | Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || | || || || | ||| | || || ||||| | || || |||| Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 64434 AAATTTGCATT-TTAA 64448 |||| |||||| |||| Sbjct 17408 AAATCTGCATTCTTAA 17393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608675680960