Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1476 111 2e-19 seq5374 96.9 3e-15 >seq1476 Length=9414 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| || | || || ||| || ||||||||||||| | Sbjct 8876 GACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCA 8935 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | |||||||| || ||||| ||||| || ||||||||||| |||||| || | | Sbjct 8936 AAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTGGATTTTCGCCTTCACA 8995 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | || || | || ||||| || | ||| | ||||| |||||||| || || Sbjct 8996 TTG-TCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTT 9054 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 9055 AACAAAAATTTGCAT 9069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || || |||||||| || | || || ||| || ||||||||||||| Sbjct 9102 TTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGG 9161 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || || || ||||| || ||||| ||||| ||| || || | Sbjct 9162 CGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCA 9221 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | ||||| || || | || | ||||| ||||||| |||| Sbjct 9222 CGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTT 9281 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 9282 TCACAAATATCTGCAT 9297 >seq5374 Length=4546 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||| || | |||| || || || |||||||| || Sbjct 4435 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 4376 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || |||||||| || | |||| ||||| || || || ||||| Sbjct 4375 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 4316 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | || | |||| | || | ||||| | ||||| || Sbjct 4315 ATTCCTTCTTTGTC-TTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAAC 4257 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 || | || | || || ||||| || ||||| |||||||||||||||| Sbjct 4256 TTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCATGG 4207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226520228480