Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3351 125 6e-24 seq2942 105 6e-18 seq1476 89.7 5e-13 >seq3351 Length=46634 Score = 125 bits (138), Expect = 6e-24 Identities = 605/938 (64%), Gaps = 27/938 (3%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG-AG 123664 || |||||||||||||| ||||| ||||||||||| || || | ||| |||||||| || Sbjct 38524 GAGACCGGAACGCCGTATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAG 38583 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 | ||| ||||| || || || ||||| |||| ||||| ||||| ||| || | Sbjct 38584 AATCTT-GGAACCATTCGATCAAGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTC 38642 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGC---GTGAATCGTTGCGTCGAAAA 123781 | | ||||||| || || ||||||||||| | | || || || ||| || | | Sbjct 38643 CAAAGAAGTGGCAGTATGCAATTTGGCTTCCA-TCGCATTGTCAAAATTTGTGTATCAGA 38701 Query 123782 CGGCGCTTTTAATTTCCAAACGCTCAAACG-CATAACAAAAACTGTAGTAAAGAATTTGA 123840 | ||| ||||| |||| | | ||| || ||||||| || || ||| | | Sbjct 38702 AAG-AATTTCAATTTGCAAA--ATTATACGAAATCACAAAAATCGTTACGAAAAATCTCA 38758 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 ||||||| || ||| | |||| |||||| | ||||| | || ||| | || Sbjct 38759 ACAAAATCATTGATCTCAATTATTATCCGATTCCTGAAGCACAAGTGAGCAATCAGCGAC 38818 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 | ||||| | ||| | ||| ||||||| | ||||| ||||| || || || | | | Sbjct 38819 ATCGACCGATTGGAATCGGCGTTCAAGGTCTTGCCGATACGTTTTTACTGATGAGTCTTC 38878 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | | |||||| | | || ||| || | |||| ||||| || |||| || Sbjct 38879 CATTTGAAAGCAAAGCTGCTCGCGAGCTCAACAAAGAAATTTTTGAAACGATGTATTTCG 38938 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTG--CGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 || |||| || | ||| | | || || | ||| ||||||| || || || Sbjct 38939 CGGCGATGGAAGCTTCCATGGAATTGGCACGGGAA--CTCGGACCGTACGAGAGCTATGC 38996 Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATG-CTACACCGA--C 124135 || || | || |||||||| || || | || |||||| | | | |||| | Sbjct 38997 TGGATCACCAGTTAGTCGAGGTATCTTTCAATTTGATATGTGGCAGGTCATTCCCGATTC 39056 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTC 124195 | ||||| |||| || ||| | | || | || ||||| | || ||||| Sbjct 39057 CGGTCGATGGGATTGGAAGCAGTTGAAAGAGCAAGTAGCTACTCACGGAATCCGAAACTC 39116 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 || || | || ||||| || || | || ||||||||| | || || ||| || Sbjct 39117 TTTGCTGCTCGCTCCGATGCCAACCGCCTCAACGGCTCAAATTCTCGGCAATTGCGAGTC 39176 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG-ATTTTCAAG 124314 |||||||||||||| ||| ||| | ||||| || | || || | |||| ||| Sbjct 39177 TATCGAGCCGTTCACTTCCAACATGTTCAATCGACGCGTCCTCGCTGGAGAATTTACAAT 39236 Query 124315 TGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGT--ACGATGAAAACAT 124372 || | || | || | |||| || | | | | | ||||||| || || | || | Sbjct 39237 TG-TCAACAAATATCTCATGGAAGAGCTTATTGAGATGAATTTGTGGAC-AT-CAGACGT 39293 Query 124373 GCGCAACGAAATTATT-GCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAAC 124431 || || |||| || ||| | | || ||| || |||||| |||||| | Sbjct 39294 TCGGAATCAAATCCTTCGCGATC-GCGGTTCCGTACAAAATATCGCTGAAATTCCGCCTC 39352 Query 124432 ACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAA-AAATAAACGATTAATTGAAATG 124490 | || || || ||||||||| || |||||||| || || | ||||| | || ||| Sbjct 39353 ATGTGAAAGAAAAGTACAAAACAGTTTGGGAAATCAAGCAAAAGGCGATT-TTGGACATG 39411 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528 || | ||| ||||| ||||||| ||| |||||||| Sbjct 39412 GCTGCCGATCGAGGAGCGTACATTTGTCAGAGTCAATC 39449 >seq2942 Length=30195 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 |||||||| || ||||| || ||| || |||||||||||||||||| | ||| Sbjct 17586 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 17527 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || || || ||||| || ||||| ||||| || |||||||| || || | || Sbjct 17526 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 17467 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | |||||||| || ||||| || ||||| | ||||| ||||| || || || || ||| Sbjct 17466 ATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 17407 Query 45333 ATTTGCAT 45340 || ||||| Sbjct 17406 ATCTGCAT 17399 >seq1476 Length=9414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| | |||| ||||||||| || ||||| || ||||| Sbjct 9068 ATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 9127 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||| || ||| | |||| |||||||| || || Sbjct 9128 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGA 9187 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || || | || | || | ||||| || ||||| Sbjct 9188 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCAATAGTGTCTGATGACTC 9246 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 9247 GACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 9297 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACG-GTTTTAGAATCGT 45189 || ||||| ||||| || || || || || || ||||| || || | | | || | Sbjct 8861 ACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCG--TCTT 8918 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| |||||| || || | || | ||||||||||| || ||||| |||||||| || | Sbjct 8919 CCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTGTCCT 8978 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | ||||| || | || | || || ||||| || ||||| | |||| |||| Sbjct 8979 GGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTT 9038 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || |||||||||||||| Sbjct 9039 TCCCAGTCAGCGTCTTAACAAAAATTTGCAT 9069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970520168640