Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1503 114 2e-20 seq3351 89.7 6e-13 >seq1503 Length=45688 Score = 114 bits (126), Expect = 2e-20 Identities = 267/398 (67%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 34308 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 34367 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 34368 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 34427 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 34428 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 34487 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 127770 || ||||| || || | || |||| || | ||||| || || | | || || Sbjct 34488 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CACAGTAAATGCTGTTT 34546 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT 127830 ||| | ||||||||||||||| |||| || | | ||||| ||| ||| | | Sbjct 34547 TTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATT 34606 Query 127831 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 ||| ||| ||| ||| | |||| || | || |||||| ||||| |||||| | Sbjct 34607 TTC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCACTG 34664 Query 127889 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 127926 ||||| | || ||| ||| ||||||||||| Sbjct 34665 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATC 34702 >seq3351 Length=46634 Score = 89.7 bits (98), Expect = 6e-13 Identities = 369/574 (64%), Gaps = 11/574 (2%) Strand=Plus/Minus Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTC--TTCACCCACAGCCTCTGAGAGCCCTGGT 116712 |||||||||| || | || ||||| || ||| |||| | ||| | || | ||| Sbjct 38454 CTCGTACTTTTCATATAACGCATCAAATTCGCTTC-CCCAT-GTCTCATAAAGTCGTGGA 38397 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 |||| | |||||||| | | ||||| || || || || ||||| || || Sbjct 38396 GCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGA 38337 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||| || || | || | ||| ||| ||| ||||| || ||||| Sbjct 38336 TCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTC 38277 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 ||| | |||| ||| || | ||||||||||||||| || || || || | || | Sbjct 38276 TTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAA 38217 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 ||||| || || | ||| | || | || || | || || | || || || ||| Sbjct 38216 GACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGA 38157 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT 117009 |||||||||| || |||| || ||||| ||||| |||||| | ||| ||| Sbjct 38156 AGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAG 38097 Query 117010 CTGACATCGTGGATGTGC--ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | || || |||| | | | |||||||| || ||||||||||| || || || | Sbjct 38096 C-GA-ATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATT 38039 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | || || |||| || || ||||| || ||| | | | | | || || || Sbjct 38038 GTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACG 37979 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 ||| | ||| || | || || || || ||||| || || || || || || | || | Sbjct 37978 ACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGA 37919 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC 117221 ||| ||||| | || || || ||||| || Sbjct 37918 ACTTTTGTGACATGTGTTCATACGTTTCCAAAAC 37885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613462843429440