Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1503 167 2e-36 seq2942 98.7 1e-15 seq1476 93.3 4e-14 seq5374 87.8 2e-12 >seq1503 Length=45688 Score = 167 bits (184), Expect = 2e-36 Identities = 411/616 (67%), Gaps = 12/616 (2%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||| || |||||||| ||||| | || || || | ||||| || || ||| Sbjct 34285 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATT--TGA 34342 Query 132947 AAGTCAAG--CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 || ||| || ||||| | || ||||| || ||||||||||| | | ||| || Sbjct 34343 AAAGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCC 34402 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT- 133063 || || |||| || ||||||||||| || || |||| | || | |||| ||| | Sbjct 34403 GGAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATA 34462 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||||| || ||| || |||||||| || || | | |||||||| || |||| Sbjct 34463 CTTTGGAT-CGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTT 34521 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA-GGAACGC--ACGTAGGTGTCGATGA 133180 | || ||| || ||| | |||| ||| | ||| | | ||| || || || | Sbjct 34522 CAATCGCGCACAGTAAATGCTGTTT---TTCAGTTGGATCTTTGATGTATGTATCAATCA 34578 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 |||||||| ||||||||||| || || || || |||||||| ||||||||||| | Sbjct 34579 ATAACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATC 34638 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 | || ||| | ||| || || |||| | | | |||||||| ||||| || | Sbjct 34639 GAGCTTCGGGGATCTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTGACAATTC 34698 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || ||||| || || ||||||| |||||| ||||| || || | || ||||| | Sbjct 34699 CATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATA 34758 Query 133361 AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 |||||| | |||| | || || | || || |||||||||| | Sbjct 34759 TATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTG 34818 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 |||| ||||| || ||||| ||| || || || | |||||| ||||| | ||||| | Sbjct 34819 CCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGC 34878 Query 133481 GGCGGGGGTTTTCGCG 133496 || || ||||| || Sbjct 34879 GGTTCGGATTTTCTCG 34894 >seq2942 Length=30195 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || ||||| || ||||| ||||| | || ||||| | Sbjct 17395 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 17454 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | || | || || | ||||| || |||||||| |||| Sbjct 17455 ATCCGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGA 17514 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || ||||| |||| |||| || || ||| || || Sbjct 17515 CCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTA 17574 Query 38420 CAACATCCAAAA 38431 |||||||||||| Sbjct 17575 CAACATCCAAAA 17586 >seq1476 Length=9414 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| || ||||| | || || ||||| || || | || |||||| | | Sbjct 9298 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATC 9239 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| || |||||||| | || | Sbjct 9238 AGACACTATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATC 9180 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || ||||| || || |||| || || || || |||| Sbjct 9179 AGCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACA 9120 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| || ||| | ||| |||| |||||||| ||| Sbjct 9119 ACATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGT 9082 >seq5374 Length=4546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || |||||||| || || || |||||||| | || || ||| | | Sbjct 4209 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4268 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | |||||||| |||||||| | || || Sbjct 4269 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4328 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| || ||||| || || |||| || || || || |||||| Sbjct 4329 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 4388 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | ||| |||| || ||||| ||| Sbjct 4389 ATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGT 4424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500136637506560