Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5337 141 1e-28 >seq5337 Length=51943 Score = 141 bits (156), Expect = 1e-28 Identities = 277/399 (69%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 154713 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCA 154772 |||||||| ||||| ||| ||| || |||||||| ||||| |||||||| || ||||| Sbjct 27738 AATGTATGCTTGATTCCAATGTCTGCTCATGGAACGAATCCAGCTAGTGCGGTAATGGCT 27797 Query 154773 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGA-CATCAAAGATCT 154831 |||||||||||||| | ||| ||| || || | || || || || | || |||| | Sbjct 27798 GGGATGAAAGTTGTGGTCGTCCAGTCAGACGACAAGGGGAATATCGATCGTC-GAGATTT 27856 Query 154832 AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATC 154891 ||| || ||||| | | | | || |||| || | | ||||| || |||||||| Sbjct 27857 AGAAAACAAAGCGAAAAAGCACGCAAATGAATTGAGTGCTCTCATGATCACCTACCCATC 27916 Query 154892 TACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAG-ATCG-TTCATGACAAT 154949 || ||||||| || | | | | | | | |||||| | | || | | || || Sbjct 27917 CACGTATGGTGTCTTCG-AGCAAGGAGTCCA-AGATATCTGCGCATTGATCCACTCGTAT 27974 Query 154950 GGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACT-AGCAAAACC 155008 ||||| || || || | |||||||| ||| | |||||||| || || || |||| | Sbjct 27975 GGTGGCCAAGTGTACATGGATGGAGCGAATATGAATGCACAAGTCGGCCTGTGCAATCCG 28034 Query 155009 ATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACA 155068 | | | ||| || ||||| || ||||| || | || ||||||||||| || || || Sbjct 28035 AAATCCAT-TGGAGCTGATGTCTGCCATCTCAATCTCCACAAAACATTCTGCATCCCTCA 28093 Query 155069 TGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGC 155107 || ||||| ||||| || || || | || || ||||| Sbjct 28094 CGGTGGTGGTGGTCCAGGAGTTGGAACCATTGGCGTAGC 28132 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAG 153266 || || ||||| || ||| ||| |||||| | || || || || ||| | || ||| Sbjct 26175 ATCGGCCAAGGGTATCATGACTGCATCACACCCGCGGTTATCCAACGTAACATGCTGGAG 26234 Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 ||||| | ||||| ||| | || || || || ||||||||||| || || || ||||| Sbjct 26235 AATCCGGGCTGGTATACAGCGTATACGCCGTACCAAGCTGAGATCTCACAAGGTCGATTG 26294 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 ||| | | |||| ||| || | | ||| || |||||||| | | | || Sbjct 26295 GAAATGCTGCTGAATTTCCAGACAATGGTTCAAGATCTCACAGGATTGGGATTCTCGAAT 26354 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || ||||||||||| || || ||||| ||||||||| Sbjct 26355 GCGTCACTTTTAGATGAAGCGACAGCTGCAGCTGAAGCAATG 26396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579170922914560