Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5337 123 3e-23 >seq5337 Length=51943 Score = 123 bits (136), Expect = 3e-23 Identities = 273/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 |||||||| ||||| ||| ||| || |||||||| ||||| || || || ||||| Sbjct 27738 AATGTATGCTTGATTCCAATGTCTGCTCATGGAACGAATCCAGCTAGTGCGGTAATGGCT 27797 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGA-CATCAAAGATCT 159506 |||||||||||||| | ||| ||| || || | || || || || | || |||| | Sbjct 27798 GGGATGAAAGTTGTGGTCGTCCAGTCAGACGACAAGGGGAATATCGATCGTC-GAGATTT 27856 Query 159507 AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATC 159566 ||| || ||||| | | | | || |||| || | | ||||| || || ||||| Sbjct 27857 AGAAAACAAAGCGAAAAAGCACGCAAATGAATTGAGTGCTCTCATGATCACCTACCCATC 27916 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG-ATTG-TTCATGAGAAT 159624 || ||||||| || | | ||| | | |||||| | | |||| | || | || Sbjct 27917 CACGTATGGTGTCTTCG-AGCAAGGAGTCCA-AGATATCTGCGCATTGATCCACTCGTAT 27974 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCT-AGCAAAACC 159683 ||||| || || || | ||||| || ||| | |||||||| || || || |||| | Sbjct 27975 GGTGGCCAAGTGTACATGGATGGAGCGAATATGAATGCACAAGTCGGCCTGTGCAATCCG 28034 Query 159684 ATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACA 159743 | | | ||| || ||||| || ||||| || | || || |||||||| || || || Sbjct 28035 AAAT-CCATTGGAGCTGATGTCTGCCATCTCAATCTCCACAAAACATTCTGCATCCCTCA 28093 Query 159744 TGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 || ||||| ||||| || || || | ||||| ||||| Sbjct 28094 CGGTGGTGGTGGTCCAGGAGTTGGAACCATTGGCGTAGC 28132 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||| || ||| |||||||||| | || || || || ||| | || ||| Sbjct 26175 ATCGGCCAAGGGTATCATGACTGCATCACACCCGCGGTTATCCAACGTAACATGCTGGAG 26234 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 ||||| | ||||| ||| | || || || || ||||||||||| || || || ||||| Sbjct 26235 AATCCGGGCTGGTATACAGCGTATACGCCGTACCAAGCTGAGATCTCACAAGGTCGATTG 26294 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||| | | |||| ||| || | | ||| ||||||||| | | | || Sbjct 26295 GAAATGCTGCTGAATTTCCAGACAATGGTTCAAGATCTCACAGGATTGGGATTCTCGAAT 26354 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || ||||||||||| || || ||||| ||||||||| Sbjct 26355 GCGTCACTTTTAGATGAAGCGACAGCTGCAGCTGAAGCAATG 26396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588008683898240