Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1503 327 1e-84 seq3351 185 1e-41 >seq1503 Length=45688 Score = 327 bits (362), Expect = 1e-84 Identities = 624/907 (69%), Gaps = 14/907 (2%) Strand=Plus/Plus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCA 18733 |||||| |||| | ||| ||||| || || |||||||| | | || || ||| |||| Sbjct 34007 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAAT-CATATCCA 34065 Query 18734 TAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTC 18793 | | ||||| ||||| | | ||||| || ||| || | | | || | || Sbjct 34066 TCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATC 34125 Query 18794 TATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 |||||| ||||| | || ||| ||||| | |||||||||| |||| | | Sbjct 34126 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 34185 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATA 18913 | || |||| |||| | |||||||||||| || | || || || || || || | Sbjct 34186 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCAT 34245 Query 18914 CAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA--ACATCAAACATGCAAAATC 18971 || |||| | | || ||| | | || | |||||| ||||||||| || Sbjct 34246 GAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAGTC 34303 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||||||||| || || | ||| || | ||||| ||||| | |||||||||| Sbjct 34304 ACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAA 34363 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTA 19090 ||||| ||| || | ||| |||||||| ||| |||||||| || || || || ||||| | Sbjct 34364 TCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTCGA 34422 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTATTATGAATCCATTTC 19149 | || ||||| || || | ||||||| || ||| || ||| || || ||||||| Sbjct 34423 CGGCCGCAAAGGCTACCACTCTTTCTGCA-AACGAGGCATACTTTGGATCGCACCATTTC 34481 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| | || || || | || || || ||||| || || | | || || | Sbjct 34482 AACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGC 34541 Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 ||| || |||||| | |||| ||| |||||||| |||| ||| || || Sbjct 34542 TGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGT 34601 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 ||||||||||| || || |||||||||||||| |||| ||||| | ||||| || ||| Sbjct 34602 ATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA 34661 Query 19330 CTAC--AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || | ||| || | | | | ||||||||| || ||||||||||| |||||||| || | Sbjct 34662 CTGCTGAAATTCAT--GGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGG 34719 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | || || ||||| ||||| ||| |||||| | || || ||| ||||| || | Sbjct 34720 CCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCATGT 34779 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | | ||||| | |||||| | |||||||| ||||||||||| |||||||||| Sbjct 34780 CATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACATGT 34839 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 ||| || ||| | |||||| ||||||| ||||| | || ||||||| ||||| Sbjct 34840 CCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAAGAA 34899 Query 19568 TAGGTTC 19574 |||||| Sbjct 34900 AAGGTTC 34906 >seq3351 Length=46634 Score = 185 bits (204), Expect = 1e-41 Identities = 418/626 (67%), Gaps = 2/626 (0%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| || ||||||||||| ||| ||||| | || || | ||||| Sbjct 38347 TCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCAT 38288 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| |||| | ||||| ||||| || | ||||| || ||||| || |||| || Sbjct 38287 TTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGAT 38228 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | ||||| | ||| || || ||| |||||||| | |||| || || | | Sbjct 38227 AAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCAT 38168 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | |||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 38167 TGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAAC 38108 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | | | | ||||| ||| | || ||||| || ||| || || || Sbjct 38107 TGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATAC 38048 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || || ||||| || || ||| ||||||| ||| ||||| Sbjct 38047 ACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATA 37988 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||||| || | ||| || || ||||| | ||| || | || |||| ||||| Sbjct 37987 GAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCAT 37928 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| | || | ||| | || ||| ||||| | ||| | || | || | || Sbjct 37927 GCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTT 37868 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGTTA 48749 ||||| || | || || ||||||| ||||| ||| || | |||| ||| |||| | Sbjct 37867 TGTGTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCA 37809 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 || | ||| ||||| ||||| |||| |||||||| |||||||||| ||| |||| Sbjct 37808 TTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAG 37749 Query 48810 TCGTTATCATTAATAATTGATGAATT 48835 || ||||| ||||||| ||||| Sbjct 37748 TCTCTATCACCGATAATTGCGGAATT 37723 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 |||||| | ||| ||||| || ||||| | |||| ||||| | ||||||||||| Sbjct 39552 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 39493 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 ||| | |||| | | || || | ||| |||||||| || |||||||||||| ||| Sbjct 39492 AGTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 39433 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | || |||| ||| || ||||| || ||||| || |||| || ||||| ||||| Sbjct 39432 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 39373 Query 47192 TTTATAAATTTGTTT 47206 ||| || ||| ||| Sbjct 39372 TTTGTACTTTTCTTT 39358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562068159533760