Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5337 123 3e-23 >seq5337 Length=51943 Score = 123 bits (136), Expect = 3e-23 Identities = 273/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 138180 GCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 ||||| ||||| | || || || ||||| ||||| || || || || |||||||| || Sbjct 28132 GCTACGCCAATGGTTCCAACTCCTGGACCACCACCACCGTGAGGGATGCAGAATGTTTTG 28073 Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCT-AGACCTACCTG 138298 || | ||| ||||| || ||||| || ||| | | | | |||| || || || || Sbjct 28072 TGGAGATTGAGATGGCAGACATCAGCTCCAATGG-ATTTCGGATTGCACAGGCCGACTTG 28014 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA-CGAT-CTTA 138356 |||||| | ||| || ||||| | || || || ||||||| || | | || | | Sbjct 28013 TGCATTCATATTCGCTCCATCCATGTACACTTGGCCACCATACGAGTGGATCAATGCGCA 27954 Query 138357 CATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 |||||| | | ||| | | || ||||||| || ||||| || || ||||| | | Sbjct 27953 GATATCT-TGGACTCCTTGCT-CGAAGACACCATACGTGGATGGGTAGGTGATCATGAGA 27896 Query 138417 CATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATG-TCTATGTT 138475 | |||| || | | | | ||||| || |||| |||| || | || || || Sbjct 27895 GCACTCAATTCATTTGCGTGCTTTTTCGCTTTGTTTTCTAAATCTC-GACGATCGATATT 27837 Query 138476 GCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 || | || || ||| ||| | ||||||||||| || ||||| || |||||||| || Sbjct 27836 CCCCTTGTCGTCTGACTGGACGACCACAACTTTCATCCCAGCCATTACCGCACTAGCTGG 27777 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 ||| |||||||| || ||| ||| |||| |||||||| Sbjct 27776 ATTCGTTCCATGAGCAGACATTGGAATCAAGCATACATT 27738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || ||||| || || ||||||||||| || || || || | | | ||||| Sbjct 26396 CATTGCTTCAGCTGCAGCTGTCGCTTCATCTAAAAGTGACGCATTCGAGAATCCCAATCC 26337 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || ||| | | || ||| |||| | | |||||||| || || || || Sbjct 26336 TGTGAGATCTTGAACCATTGTCTGGAAATTCAGCAGCATTTCCAATCGACCTTGTGAGAT 26277 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||| || || || || | ||| ||||| | |||||||| || | ||| || || Sbjct 26276 CTCAGCTTGGTACGGCGTATACGCTGTATACCAGCCCGGATTCTCCAGCATGTTACGTTG 26217 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 || || | |||||| ||| ||| || ||||| || || Sbjct 26216 GATAACCGCGGGTGTGATGCAGTCATGATACCCTTGGCCGAT 26175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578956538415680