Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3351 161 1e-34 seq1503 140 4e-28 >seq3351 Length=46634 Score = 161 bits (178), Expect = 1e-34 Identities = 674/1048 (64%), Gaps = 33/1048 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| | ||| | ||||| || || ||||||| ||| || | | || | || Sbjct 37827 CCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGT 37886 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 75327 ||||| || || || | ||||| ||| | |||| || || ||||| || || || Sbjct 37887 TTTGGAAACGTATGAACACATGTCACAA---AAGTTCTTTACGCATGCAACTCCGACGCT 37943 Query 75328 CTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||||||| || || || |||| || | || || || || | ||| | || Sbjct 37944 TTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGA 38003 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 || || ||| |||| || || | || || | | |||||| || ||||||||||| Sbjct 38004 TGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGC 38063 Query 75448 TGGGGGTATTGGGAT--GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 ||| |||||||| | | | |||| || | | ||| || | |||||| ||| Sbjct 38064 TGGCGGTATTGGCGTCAGTATTTCCA--ATATTCGCTCCACCAACAGTTATATTCGCGGG 38121 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || ||||| || |||| ||| ||||||||||||| || || || | |||||| || Sbjct 38122 ACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGA 38181 Query 75566 TATGTAAATCAAG-CGGGGCGTCGC--AAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || || |||||| ||| | | || || ||||| | || | || | || || ||| Sbjct 38182 TACGTTGATCAAGGCGGTGGGAAGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGG 38241 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || || |||||| | ||||| || || |||| || || || | ||| ||| Sbjct 38242 CACGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACTCCATCGA 38301 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | ||||| | |||| | || ||||| || || || || ||||| || || || || Sbjct 38302 GCTCGAGATTTGTTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGAC 38361 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 ||||| | | |||||||| || |||| ||| | || | || | |||| Sbjct 38362 AACCAAGAATGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGAGACA-TGGGG 38420 Query 75803 GAG-GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 || || ||||| || | || |||||| || | | ||| |||||| Sbjct 38421 AAGCGAATTTGATGCGTTATATGAAAAGTACGAGTCTCAAAACATTGCCCGAAAGACTGT 38480 Query 75862 ACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 |||| | | ||| || ||| | | |||| ||||| ||||| || || Sbjct 38481 CAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAACGCCGTA 38540 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||||||||| || |||||||| || || || ||||| | ||||| || Sbjct 38541 TATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAACCATTC- 38599 Query 75982 GAGCTCAA---ATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | |||| |||| ||| ||||| | |||||| |||| | || ||| || Sbjct 38600 --GATCAAGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAGTGGCAGT 38657 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 ||||||||||| || ||||| | |||| | ||| || | || | | ||| | Sbjct 38658 ATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATCA-GAAAG----AATTTCAA 38712 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || || |||| | | ||||||||||| || ||||| |||||||| ||| | ||||||| Sbjct 38713 TT-TGCAAAATTATACGAAATCACAAAAATCGTTACGAAAAATCTCAACAAAATCATTGA 38771 Query 76159 CAGAAATTTTTATCCCGTTGAGACTG-CGCGAAAGT--CTAATATGCGACACAGACCTAT 76215 |||| |||||| || ||| || |||| ||| |||||| |||| || Sbjct 38772 TCTCAATTATTATCCGATT---CCTGAAGCACAAGTGAGCAATCAGCGACATCGACCGAT 38828 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 ||| | || ||||||||||| || ||| Sbjct 38829 TGGAATCGGCGTTCAAGGTCTTGCCGAT 38856 >seq1503 Length=45688 Score = 140 bits (154), Expect = 4e-28 Identities = 303/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || ||||||| | || || || || | |||| |||||||| | ||||||||| Sbjct 34753 GACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATT 34694 Query 64831 GTTTTTGAGAATATCAATAACAATTT-TGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||| ||| || | ||||| || | ||| || ||||| |||||| || | Sbjct 34693 GTCAATGAAAATCTCGCCATGAATTTCAGCAG-TGAGGTTCAGATCCCCGAAGCTCGATG 34635 Query 64890 ATTCTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTG 64947 || |||| || |||| ||| ||| |||| | || ||| ||||| |||| Sbjct 34634 CTTTTACGGATTTCAAATTGCAATA--GAAAATATACACTCGGAAGTGTATTCGTTATTG 34577 Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||| | |||||| || ||| | ||||||| |||| ||| | || || |||| Sbjct 34576 ATTGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACA 34517 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 | || || || || || || ||||||| ||||||||| || |||||| | | Sbjct 34516 ATCCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTATGCC 34457 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || || | | | || |||||| || || || ||||| |||||||| ||| Sbjct 34456 TCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCA 34397 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| |||| | |||| ||||||| || || | ||||| || || ||||| |||||| Sbjct 34396 TTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAAT 34337 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || || || || ||||| || || || Sbjct 34336 GAGCTCATCAGTCGTGATGAAGGACTACA 34308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596526468017920