Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5374 109 5e-19 seq1476 109 5e-19 seq234 96.9 3e-15 seq3351 82.4 7e-11 >seq5374 Length=4546 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| ||| | |||||||| || || || || || || | ||||| || | Sbjct 4206 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 4265 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | ||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 4266 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 4325 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || |||||| ||||||| || || ||||| || || || | | | | ||||| Sbjct 4326 CAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTAC 4385 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || || ||||| || | ||||| ||| Sbjct 4386 AACATCCAGAAAGAATCAACGTTGCACTTAGTG 4418 >seq1476 Length=9414 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| ||||| || || |||||||||||| | ||||| ||| | | Sbjct 9069 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 9010 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || || ||||| ||||||||||| || ||||| || || Sbjct 9009 GATACTATCGACAATGTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGACCAG 8950 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 |||||| | || |||||||| ||||| ||||| || || || || | | ||||| Sbjct 8949 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGA--CG-GACGCACGCTTGCGGATTAC 8893 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| || || || || || || |||| Sbjct 8892 AACATTCAGAAAGAGTCTACGCTTCATCTGGT 8861 >seq234 Length=209331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| ||||| |||||||||||| | | ||||| | || | || || ||| Sbjct 198504 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 198563 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || |||||||| |||||||| ||||| || ||||||||| | || |||||||| ||||| Sbjct 198564 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 198623 Query 24851 CTGGAGGA 24858 || || || Sbjct 198624 CTTGAAGA 198631 >seq3351 Length=46634 Score = 82.4 bits (90), Expect = 7e-11 Identities = 278/426 (65%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 138193 GTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAA 138252 |||| ||||| |||||||| || || | || |||| ||| ||||| | || |||||| Sbjct 39551 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 39492 Query 138253 GTGAGTAACGCGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATG 138312 |||||| | |||||| | || | || || | |||||||||||| ||| Sbjct 39491 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 39432 Query 138313 AAAGCGCCTCGATCAATGGCCATGTTAATTAAAT----TTTTACTTTTCATCTCCCACAC 138368 | || |||||||| ||||||| | |||| |||| | || || ||||| || Sbjct 39431 TACGCTCCTCGATCGGCAGCCATGTCCA--AAATCGCCTTTTGC--TTGATTTCCCAAAC 39376 Query 138369 GGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTT 138428 || ||||| || | ||| |||| ||| || |||||||| | | ||| Sbjct 39375 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCG-C 39317 Query 138429 GGCCGC-AATGATGCGATTTCTCATGTCATCGTTGT--ACAGATTCAACTTGATCAAGTC 138485 | ||| || ||| |||| | | ||| | ||| ||| ||||| || || | || Sbjct 39316 GATCGCGAAGGATTTGATTCCGAACGTC--TGATGTCCACAAATTCATCTCAATAAGCTC 39259 Query 138486 GTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAAT 138545 | || |||||| |||| | | |||||| || || | || || ||| | | || Sbjct 39258 TTCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACAT 39199 Query 138546 GTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGT 138605 |||| ||||| ||||| | || ||| || || ||||| |||||||| | ||||| Sbjct 39198 GTTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGT 39139 Query 138606 CGGCAT 138611 ||||| Sbjct 39138 TGGCAT 39133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449865072403520