Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5374 116 4e-21 seq1476 105 7e-18 >seq5374 Length=4546 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||||| || | || |||||||| || ||||||||||| Sbjct 4435 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 4376 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| |||||||| ||||| ||||||||||||||||||| ||||| Sbjct 4375 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 4316 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || |||| | || | |||||||| | || ||| Sbjct 4315 ATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACT 4256 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | ||||| || || || ||||| Sbjct 4255 TCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 >seq1476 Length=9414 Score = 105 bits (116), Expect = 7e-18 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 137272 || |||||||| || ||||||||||| | || | | ||| |||||| |||||||||| Sbjct 9101 GTTGATTCTTTCTGGATGTTGTAATC-CGCAA-GCGTTCGTCCGTCTTCTAGTTGTTTAC 9158 Query 137273 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 137332 | || ||||||||||||||||||| ||||| || ||||| ||||| || || | Sbjct 9159 CGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCT 9218 Query 137333 TTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 137392 | | | || | ||||||| | || ||||| | ||| | || || || ||||| | Sbjct 9219 TCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTTTTTCCAGTCAAGG 9278 Query 137393 TTTTTACGAATATTTGCAT 137411 |||| || ||||| ||||| Sbjct 9279 TTTTCACAAATATCTGCAT 9297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||||| ||||| ||||| || ||||||||||| Sbjct 8843 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 8902 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| ||||||||||| ||| | || ||||||||||| || ||||| Sbjct 8903 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGA 8962 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | || | || |||| | ||| ||| Sbjct 8963 ATCCCTTCTTTGTCCTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACT 9022 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || |||| || || || || |||||||| Sbjct 9023 TCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 9069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488508678268800