Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3351 150 4e-31 seq1503 109 1e-18 seq1447 96.9 8e-15 seq172 87.8 4e-12 >seq3351 Length=46634 Score = 150 bits (166), Expect = 4e-31 Identities = 421/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Plus Query 110271 ATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGT 110330 ||||||| | ||| | |||| |||| ||||||||||| || |||||||| || Sbjct 37732 ATTATCGGTGATA---GAGACTTTGATTACGACTATTTTGGCTTTAAAACTCTGGAGAAA 37788 Query 110331 GCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGT 110390 | ||| | | ||||| ||||| | | |||||| || ||||| ||| | | || Sbjct 37789 TCGTATCTGTTGCGTGTGAATGGAAAAGTGTGTGAACGCCCACAACATATGATAATGCGA 37848 Query 110391 GTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTA 110450 || || | || || || | | || | | || ||| | ||| ||||| | Sbjct 37849 GTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGTTTTGGAAACGTATGAACACAT- 37907 Query 110451 AGTAAAAAGAAAGCTATT----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506 || | || ||| | || ||||| ||||| || || || || || ||||| | | Sbjct 37908 -GTCACAA--AAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCG 37964 Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566 | ||||| | || || ||||| || || | ||||||||||| || || ||||| Sbjct 37965 ACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTA 38024 Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626 || | || ||| || ||| |||||| || |||| || ||||| | | Sbjct 38025 CGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTAT 38084 Query 110627 TCATGATATTCGCTCAAA-AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 | |||||||||| | | || | |||| | |||| || ||| | |||| Sbjct 38085 TTCCAATATTCGCTCCACCAACAGTTATATTCGCGGGA-CGAATGGAAGTTCGAATGGAA 38143 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 ||||||||||| | | || ||||| ||||| || ||| || ||||||| ||| | Sbjct 38144 TTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGCGGTGGGA 38203 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| || ||||| || || ||||| | ||||| ||||| || Sbjct 38204 AGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGGCACGCGGATATCTTTGAGTTTC 38263 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||||| ||||| ||||| ||| |||| || |||| || ||||| |||||||| Sbjct 38264 TGGAACTACGTAAGAATCATGGAAATGAACTCCATCGAGCTCGAGATTTGTTTTATGCTC 38323 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||||| | ||| | || ||||||||||| |||| || Sbjct 38324 TTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGACAA 38363 >seq1503 Length=45688 Score = 109 bits (120), Expect = 1e-18 Identities = 377/582 (65%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| || |||| || ||| || |||||||||||| | | || ||| | Sbjct 34869 TATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCAAGCTTTT 34810 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| | ||||| |||||| || | || || |||| ||| || || | | Sbjct 34809 GGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATATCGGACA 34750 Query 131553 ATGAAAAAGATTTTGTTTCCAAA---GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 |||||| | | ||| | |||| || | || ||||| || | |||||||| |||| Sbjct 34749 ATGAAAGACACTTTAT---CAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATTG 34693 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGT 131669 | | ||||||||| | || ||||||| || || | || || |||| || | Sbjct 34692 TCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGATGCT 34633 Query 131670 TCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTG 131729 | ||| ||||||| || | ||| ||| || || ||||||| |||||||||| Sbjct 34632 TTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTG 34573 Query 131730 AGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTC 131789 | | | ||| || | ||| ||| | | ||| | || | | | | | | Sbjct 34572 ATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACAATCC 34513 Query 131790 C-TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGG----ATTCAAGATGATTCCGC 131844 | ||| ||| || |||||| ||||||| | |||||| || ||| | || || | Sbjct 34512 CGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGT-ATGCCTC 34455 Query 131845 TAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC 131904 ||| | |||| | ||||| ||||| || ||||| || || || || || | Sbjct 34454 G---TTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATC 34398 Query 131905 TTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAA 131964 ||||| |||| |||||||| ||||| || ||||||||||||||||| | || || || Sbjct 34397 ATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAA 34338 Query 131965 TCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | | ||||| | ||||||| | | ||| ||| ||||| Sbjct 34337 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGC 34296 >seq1447 Length=119520 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT-A 305392 |||||||| | || || ||| |||| |||||||| || ||||| ||| | ||||| | Sbjct 56052 TGTTCAATCGTCAGCCTTCATTGCACAAAATGTCAATCATGGCACATCGGGCGAAAGTCA 55993 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGC--TTGTACGCCTTATAATGCGGATT 305450 | ||||| || ||||| || |||| ||||| ||| |||| |||||||| |||| Sbjct 55992 TGCCCTGGAGA-ACTTTTCGTTTCAATG--AGTGCGTTTGCTCGCCCTATAATGCCGATT 55936 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | |||||||| |||||||||||||| | || ||| || Sbjct 55935 TCGATGGAGACGAAATGAATATGCACCTGCCACAAACA 55898 >seq172 Length=28639 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || ||| | |||||||| ||||| || |||||||| ||| | || | | Sbjct 22610 GATTTGGTGTTATTTAATCGTCAACCATCTCTGCACAAGATGTCTATCATGTCCCACAGA 22551 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAA--GTGCTTGTACGCCTTAT 305440 ||||| || || |||| | |||||||| | || || ||| || | || || Sbjct 22550 GTCAAGGTCTTCCACTGG-TCCACATTTCGTCTCAACTTATCGGTGAC-GT-CTCCCTAC 22494 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||| |||||||||||||||||| ||||||| || || ||| Sbjct 22493 AATGCAGATTTCGATGGAGATGAAATGAATCTGCATGTTCCGCAGTCA 22446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186724848270424