Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1476 118 1e-21 seq2942 111 2e-19 seq3351 95.1 1e-14 >seq1476 Length=9414 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || ||||| || || || ||||||||||| || ||| ||| | ||| || Sbjct 8861 ACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTCTTCC 8920 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || |||||||| | ||| ||||| || || || || |||||||| || || Sbjct 8921 AGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTGG 8980 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | || || || |||||||| || | ||||| ||||| Sbjct 8981 ATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTTTC 9040 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | || ||||| |||||||||||| Sbjct 9041 CCAGTCAGCGTCTTAACAAAAATTTGCATT 9070 >seq2942 Length=30195 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 ||||| |||||||| || | | || | ||| || | ||||| ||||| |||||| Sbjct 17586 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 17527 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 |||||||| || ||||| || || ||||| || |||||||| || || || || Sbjct 17526 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 17467 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | |||||||| ||||| || || ||||| || ||||| ||||| | || || |||||| Sbjct 17466 ATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 17407 Query 134706 ATTTGCATT 134714 || |||||| Sbjct 17406 ATCTGCATT 17398 >seq3351 Length=46634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 459/717 (64%), Gaps = 31/717 (4%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 |||||| | || |||| | || ||||| | |||||| ||||| |||||||||||||| Sbjct 38503 GCCATTTTGGATAGTCAGATTGAGACCGGAACGCCGTATATGCTTTACAAAGACGCTTGT 38562 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || ||| |||||| || | || |||||| | | |||||||| ||| |||| Sbjct 38563 AATCGTAAATCCAATCAGCAGAATCTTGGAACCATTCGATCAAGCAATCTCTGCTGTGAA 38622 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG----TG 8408 || | ||||| | || | |||||||| || |||||| | || || | || Sbjct 38623 ATCATCGAGTACTCAGACTCCAAAGAAGTGGCAGTATGCAATTTGGCTTCCATCGCATTG 38682 Query 8409 TTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGC 8468 | ||| || || ||| ||| | || | | |||| | |||| | ||| Sbjct 38683 TCAAAA----TTTGTGTATCAG-----AAAGAATTTCAA-TTTGCAAAATT---ATACGA 38729 Query 8469 CGTG-CAAGTGACGGTACGCAA--TTTAGATCGCATCATTGATGTCAATTTTTATCCCTT 8525 | ||| || |||| || | | | ||||||||| |||||| |||||| | Sbjct 38730 AATCACAAAAATCGTTACGAAAAATCTCAACAAAATCATTGATCTCAATTATTATCCGAT 38789 Query 8526 GGAAGAAGCGCGCGT-ATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTC 8584 ||||| | || | | | || ||| || |||| |||| | ||||| ||||||| Sbjct 38790 TCCTGAAGCACAAGTGAGCAATCA-GCGACATCGACCGATTGGAATCGGCGTTCAAGGTC 38848 Query 8585 TGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCA 8644 | ||||| ||||| || || | || || | |||||| ||| || ||| ||||| Sbjct 38849 TTGCCGATACGTTTTTACTGATGAGTCTTCCATTTGAAAGCAAAGCTGCTCGCGAGCTCA 38908 Query 8645 ACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCC 8704 ||| | |||| |||||| |||||| || || | ||||| | || | || | Sbjct 38909 ACAAAGAAATTTTTGAAACGATGTATTTCGCGGCGATGGAAGCTTCCATGGAATTGGCAC 38968 Query 8705 GAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAAT 8764 | ||| | || ||||||| || || || || | || || || || || |||| Sbjct 38969 GGGAACTCGGACCGTACGAGAGCTATGCTGGATCACCAGTTAGTCGAGGTATCTTTCAAT 39028 Query 8765 ACGACATGTGGAATGTCACGCCCACCTCT--TTG-TGGAATTGGAGCGATTTGAAAC-GC 8820 || |||||| | |||| ||| || | | ||| |||||| | |||||| || Sbjct 39029 TTGATATGTGGCAGGTCATTCCCGATTCCGGTCGATGGGATTGGAAGCAGTTGAAAGAGC 39088 Query 8821 AA--AATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCA 8878 || | | |||| ||| | || || || || || | ||| ||||| |||||| Sbjct 39089 AAGTAGCTACTCA---CGGAATCCGAAACTCTTTGCTGCTCGCTCCGATGCCAACCGCCT 39145 Query 8879 CGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGT 8935 | || |||||||| | || || ||| || | ||||||||||| |||| ||| Sbjct 39146 CAACGGCTCAAATTCTCGGCAATTGCGAGTCTATCGAGCCGTTCACTTCCAACATGT 39202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505361859695680