Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1503 293 3e-74 seq3351 288 1e-72 >seq1503 Length=45688 Score = 293 bits (324), Expect = 3e-74 Identities = 624/915 (68%), Gaps = 35/915 (4%) Strand=Plus/Plus Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 ||||| |||||||||||||| ||||| || ||||| |||| || || || | ||||| Sbjct 34008 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 34067 Query 39392 AAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTC-TGAAATCAATCT 39450 | ||||| ||||||| || | |||| || | | || | | | || || ||||| Sbjct 34068 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAA-CAATCG 34126 Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 ||| || ||||| || |||||| ||||| |||||||||| || || | || Sbjct 34127 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGAC 34186 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG-ATG 39569 ||| || | || || ||| |||| ||||||| ||||| || | || || | ||| Sbjct 34187 TGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATG 34246 Query 39570 TTACTACCTCATCACTCGGTGGATGCAA---TAAATGTTTAAA---CATTAAGCAGGCGA 39623 | || | | || |||| || || |||| | ||| | || || | Sbjct 34247 --AATAGAGCCT---TC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAA 34299 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 ||||||||||||| || ||||| | ||| || | || || ||||| |||||||||| Sbjct 34300 AGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCA 34359 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGCCT 39742 | | || || || || ||||||||||| | |||| || ||||| || || ||||| ||| Sbjct 34360 TCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCT 34418 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATC----CA 39798 || || || ||||| || || | ||| ||| | | | || || || ||| || Sbjct 34419 TCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCA 34477 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| ||||| | ||||| || | || || || |||||||| || || | | Sbjct 34478 TTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAA 34537 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 || ||||||||| |||||| | |||||||| || || | ||||| ||| || Sbjct 34538 ATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGA 34597 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 || || ||||| || || || |||||||||||||| |||| ||||| | || || || Sbjct 34598 GTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAAC 34657 Query 39979 CTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 ||| || ||| || | || | ||||||||| || ||||||||||| || ||||| Sbjct 34658 CTCACTGCTGAAATTCATGGCG--AGATTTTCATTGACAATTCCATCACTGGCTGCAAAG 34715 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT-CAATTTATT---CCAGTC 40092 || ||||| || ||||| ||||| | | |||||| ||| | || |||| |||||| Sbjct 34716 AAGGCCAACACGTGTTTGATAAAGTGTCTTTCAT----TGTCCGATATATTAAGCCAGTC 34771 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 ||| || || | | ||| | |||||| || |||||||| |||||||| || || Sbjct 34772 ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTT 34831 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212 ||||||| ||| || ||| | |||||| ||||| | ||||| | || ||||||| Sbjct 34832 ATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTC 34891 Query 40213 TGCAAGGATGGGTTC 40227 | ||| | ||||| Sbjct 34892 TCGAAGAAAAGGTTC 34906 >seq3351 Length=46634 Score = 288 bits (318), Expect = 1e-72 Identities = 1186/1852 (64%), Gaps = 44/1852 (2%) Strand=Plus/Minus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 ||| || ||||||||||| || || || |||||| ||||| ||||||||||||| Sbjct 39552 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 39493 Query 68463 TGTTAGTTTGGAATAAC--TTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCG 68520 || ||||| | | || | || ||||| || |||||||| | |||||||| ||| Sbjct 39492 AGTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAA 39435 Query 68521 ATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATA 68580 ||| | ||||||| ||| || ||||| | | ||| |||||| |||||||||| Sbjct 39434 ATGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACT 39375 Query 68581 GTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCA 68637 || || | | | ||| | || | |||| | ||||||| | ||| || | | Sbjct 39374 GTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGA 39315 Query 68638 TCGGATATAATTATATTCTTGATCTCATCAT-TCCACAATTTTCTCTCCGTTAAAACTCT 68696 ||| | ||| |||| | || | || ||||||| || |||| | || |||| Sbjct 39314 TCGCGAAGGATTTGATTCCGAACGTC-TGATGTCCACAAATTCATCTCAAT--AAGCTCT 39258 Query 68697 A--AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | ||||| || || ||| |||||| |||| | || | ||| || | || Sbjct 39257 TCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATG 39198 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 || || | || || | ||| || ||| || ||||||||||| ||||| || ||| Sbjct 39197 TTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTT 39138 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| || || | || ||| |||| | || || || | || ||||| | Sbjct 39137 GGCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAAC 39078 Query 68875 TGTTTCCAATCCCAAAGATCAGAT---GGTACAACATTCCAAAGATCGTATTGTAGAATT 68931 || ||||||||||| || | || || | || | ||| | ||| |||| | || Sbjct 39077 TGCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATA 39018 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCC---TTCCTGTTCAGCTAGT 68988 || ||| | ||||||| ||| | || || ||||| |||| || || | | Sbjct 39017 CCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGAGTTCCCGT---GCCAAT 38961 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 || || || | || || |||| || ||||| ||||| | || ||||| || Sbjct 38960 TCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCG 38901 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 | || || || || |||||| | | || | ||| | ||| || | || ||| Sbjct 38900 CGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGA 38841 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || || || || || |||| ||||| || ||| || ||||| ||||| |||||| Sbjct 38840 ACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAA 38781 Query 69169 TAATTAATATCTATAATTTTATTAAGATTT--CGGACTACTACTTTAACCACGTCCTTTA 69226 ||||| | ||| || ||||| || |||||| || | || | ||| | || | || Sbjct 38780 TAATTGAGATCAATGATTTTGTTGAGATTTTTCGTA--ACGATTTTTGTGATTTCGTATA 38723 Query 69227 GTTTGAGAAAATCAAATCGTCCATCTATAACAAACATATT--CAGTGCTACAGATGCTAG 69284 ||| ||| | |||| || ||| ||| | || || || ||| | || || | Sbjct 38722 ATTTTGCAAATTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAA 38665 Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344 ||| || ||||| || || || || | || || | || || || || ||||| || Sbjct 38664 ATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCT 38605 Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404 || || || || ||||| |||||||| || ||||| ||||| |||||||| Sbjct 38604 TGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAG 38545 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 ||| |||| || || || ||||||||| || | ||| | ||||| || | || Sbjct 38544 CATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGG-----CAAACCACAATTGC 38490 Query 69465 ATTTATT--ACGGTCTT----GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTC 69518 || || ||||| | || | || | || || | | ||||| | || Sbjct 38489 TGGGCTTTGACAGTCTTTCGGGCAATGTTT-TGAGACTCGTACTTTTCATATAACGCATC 38431 Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 ||||| |||||| |||| | || ||| || || ||||| | || ||| Sbjct 38430 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 38371 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 | | | || | || ||||||||||| |||||||| ||||||||||| ||| | Sbjct 38370 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 38311 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 ||||| | || || ||||||||| ||| || || || |||||||| | || Sbjct 38310 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 38251 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCCTCCCT 69757 ||| | ||||| || |||||||| || || | ||| || || || || || | Sbjct 38250 ATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGAC-CCTTTCCGCTTCCCACCGCCTT 38192 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATT 69817 |||| | ||||| || |||| ||| | || | ||||| |||| ||| ||||| || Sbjct 38191 GATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAAC 38132 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 | ||||| || || ||||||||| | | ||||||||| |||| | || | Sbjct 38131 TTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAA 38072 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 | || || ||| || || || ||||| |||||| ||||| || || || || | Sbjct 38071 TACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGA 38012 Query 69938 TGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 | ||||||| |||| | |||||||| || | ||| | | ||||||| Sbjct 38011 TAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCG 37952 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 |||| || | || |||| ||| || || || | |||| || | | | || |||| Sbjct 37951 CATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTT 37892 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 | | | | | || | || | | || || || | || || ||||| | |||||| | Sbjct 37891 CCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTT 37832 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | || ||||| | ||| ||| | |||||| || ||||| ||||||||||||| Sbjct 37831 GTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAA 37772 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 | |||||||||| ||| ||||||||| || ||||| | ||||| || Sbjct 37771 AGCCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAG 37720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686859136493760