Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1503 279 4e-70 seq650 152 4e-32 >seq1503 Length=45688 Score = 279 bits (308), Expect = 4e-70 Identities = 629/919 (68%), Gaps = 36/919 (4%) Strand=Plus/Minus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 ||| ||| |||||||||| | |||||| | ||||| || ||| | ||| || || Sbjct 34901 TTTTCTTCGAGAAAATCCGAACCGCTTTGTCTTATTTCCGATACAACAATCTGAGATTTG 34842 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 | | ||||| || |||||| |||| |||||||| ||||||||| | |||||| | Sbjct 34841 GGACATGTATAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCA 34782 Query 43795 AGACTTAGCACATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTT 43852 ||| | | ||| || | || | | |||| |||| ||| ||||| || Sbjct 34781 TGACATGAATGACTGGCTT--AATATATCGGACAATGAAAGACACTTTATCAAACACGTG 34724 Query 43853 TTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG 43912 ||||| || ||||| || || || || || |||||||||||| | | | | ||| | Sbjct 34723 TTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTCGCCA-TGAATTTCAG 34665 Query 43913 CAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 || || ||||| | || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 34664 CAGTGAGGTTCAGATCCCCGAAGCTCGATGCTTTTACGGATTTCAAATTGCAATAGAAAA 34605 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| || |||||| |||| | |||| ||||| |||||||||||| || || Sbjct 34604 TATACACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACTGAAAA 34545 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 || | || | ||||| |||||| | || |||| ||| |||||||| | |||| Sbjct 34544 ACAGCATTTACTGTGCGCGATTGAAACAATCCCGTGCG-TTACCAATAAAGCACAATGGG 34486 Query 44091 CCCTTAAATGGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | | |||||| || |||| || || |||| |||| || | || || ||||| | Sbjct 34485 CGTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGG 34426 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGA 44206 || ||||| || || || || ||||| || ||| | ||||||||| | ||||||||| Sbjct 34425 CCGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCT-CTATATTTTGGCTGAAGAAACGA 34367 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || ||||||||||| | |||||||||||| | || |||||||||||||| ||||| Sbjct 34366 GGATTGATGCCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACAT 34307 Query 44267 TGCGATTTTGCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG- 44323 || || ||||| || || |||| | | || | | ||||| |||| | | | Sbjct 34306 TGTGACTTTGCATGTCTGATGTACTCG--AAACTGGTA---AATAAG-CTTCCAGAAGGC 34253 Query 44324 ACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACA-GC 44382 | ||| | || || || || || | || |||||||||||| | || | | | Sbjct 34252 TCTATTCATGCAATCATTTCCGACGCCGTTATCATCGAACAAGAATTTGT-ACGAGATTC 34194 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | | || || | |||| ||||||||| | ||||||| ||||| || || | | Sbjct 34193 ACTTCCAGTCGAGCTAATTGGAATGAATTCAAGTTTGATGGGTCAATACATCGAGTTTGT 34134 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA--CTATAT---TGTACAAAAC 44497 || ||||| || | | ||| | ||| | | || ||||| | | || | Sbjct 34133 GGCGGATCGATTGTTACATGCACT---TGGCG-TCAGCAAGTTATATCACGCTTCTAATC 34078 Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557 || ||||| | ||||| | ||||| || |||| ||||||||||||||||| |||||| Sbjct 34077 CC-TTTGACTGGATGGATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGC 34019 Query 44558 GTTGGAGAATATCAGCGAA 44576 |||||||||||| ||||| Sbjct 34018 GTTGGAGAATAT--GCGAA 34002 >seq650 Length=49279 Score = 152 bits (168), Expect = 4e-32 Identities = 222/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 |||||||| || || | ||| ||||| ||||| || || |||||||| || || Sbjct 30539 CGACGTATCATCTTATCCGCTTGGAATCCAACCGATTTAGCCGAAATGGCATTACCTCCC 30480 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| || | || || ||||||||| ||||| ||| | ||||| ||| |||| || Sbjct 30479 TGTCATCTGATGTGCCAATTTTACGTTGCAAATGGGGAATTATCATGCCAAATGTACCAG 30420 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 |||| | ||| || || || || || || ||||| || || || || || || | || Sbjct 30419 CGATCCGCTGATATTGGTCTGGGCGTTCCATTTAATATTGCTAGCTACGCGCTTTTGACA 30360 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||||| || || | |||| || || |||||||| | | |||||| Sbjct 30359 AAAATGATTGCACACGTGACTGATCTCCAACCCGGCGAGTTTGTTCATGTGATCGGAGAT 30300 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| ||||| |||||| | || ||| || | |||||| ||| | || | Sbjct 30299 GCCCATATCTACATGAATCACTTGGAACCGCTACAGGCACAACTTGAACGCACTCCACGC 30240 Query 41304 CCATTTCCAACGCT 41317 || |||||||| || Sbjct 30239 CCGTTTCCAACACT 30226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397427982332920